Bioconductor Formula

Showing : formula • reset

votes

976

views

BatchEffect batch RNASeqR formula DESeq2

updated 20 months ago by Michael Love 42k • written 20 months ago by estafana.t98 • 0

votes

755

views

deseq2 design formula

updated 3.5 years ago by Michael Love 42k • written 3.5 years ago by Bine ▴ 40

votes

replies

2.4k

views

deseq2 design formula batch effect

updated 4.3 years ago by swbarnes2 ★ 1.3k • written 4.3 years ago by l.rijnberk • 0

votes

replies

2.0k

views

deseq2 formula controls design

updated 4.7 years ago by Michael Love 42k • written 4.7 years ago by taveluz • 0

votes

replies

1.3k

views

variance formula expression

updated 5.3 years ago by mikhael.manurung ▴ 270 • written 5.3 years ago by rina ▴ 30

votes

replies

1.3k

views

DESeq2 design formula matrix

updated 5.9 years ago by Michael Love 42k • written 5.9 years ago by t.kuilman ▴ 170

votes

replies

2.0k

views

limma dose-response linear model model formula

updated 6.4 years ago by James W. MacDonald 65k • written 6.4 years ago by biominer ▴ 10

votes

replies

1.6k

views

limma design RNA-seq formula twins

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by Simone • 0

votes

replies

1.8k

views

DESeq2 twins design formula RNA-seq

6.5 years ago Simone • 0

votes

replies

2.3k

views

dexseq linear model formula

updated 8.5 years ago by Alejandro Reyes ★ 1.9k • written 8.5 years ago by Cornwell, Adam ▴ 110

votes

replies

25k

views

rnaseq deseq2 formula Limma

9.0 years ago AurelieMLB ▴ 50

11 results • Page 1 of 1

Recent ...

Replies

Comment: DSS CpG coverage threshold by j.gilbert • 0

Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

Segmentation is of the whole genome, I'll write some code for doing this later today.

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …

Comment: deseq2 results by sajadahmad41454 • 0

could you please tell me if the results are fine or not? ![pca summary][1] ![pca plot][2] [1]: /media/images/ee7d8693-bcbe-4a7a-a566-d3…

Answer: normalization using Deseq2 by ATpoint ★ 4.1k

counts(dds, normalized=TRUE)

Votes

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

Awards • All