Bioconductor Formula

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BatchEffect batch RNASeqR formula DESeq2

updated 20 months ago by Michael Love 41k • written 20 months ago by estafana.t98 • 0

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738

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deseq2 design formula

updated 3.5 years ago by Michael Love 41k • written 3.5 years ago by Bine ▴ 40

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2.3k

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deseq2 design formula batch effect

updated 4.2 years ago by swbarnes2 ★ 1.3k • written 4.2 years ago by l.rijnberk • 0

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1.9k

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deseq2 formula controls design

updated 4.7 years ago by Michael Love 41k • written 4.7 years ago by taveluz • 0

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1.3k

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variance formula expression

updated 5.2 years ago by mikhael.manurung ▴ 270 • written 5.2 years ago by rina ▴ 30

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1.3k

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DESeq2 design formula matrix

updated 5.9 years ago by Michael Love 41k • written 5.9 years ago by t.kuilman ▴ 170

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1.9k

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limma dose-response linear model model formula

updated 6.4 years ago by James W. MacDonald 65k • written 6.4 years ago by biominer ▴ 10

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1.6k

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limma design RNA-seq formula twins

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by Simone • 0

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1.8k

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DESeq2 twins design formula RNA-seq

6.5 years ago Simone • 0

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2.3k

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dexseq linear model formula

updated 8.4 years ago by Alejandro Reyes ★ 1.9k • written 8.4 years ago by Cornwell, Adam ▴ 110

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25k

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rnaseq deseq2 formula Limma

8.9 years ago AurelieMLB ▴ 50

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Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, this is the MDS plot at genes level. I don't have the raw data but I think the normalized data. So can we say from the plot that…

Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k

To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…

Answer: flowStats Search Error by shepherl 3.8k

We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.

Comment: How to correct for known and surrogate variables in DESeq2? by nhaus ▴ 30

Hey Crystal, did you end up getting advice? I am facing the exact same questions that you are having right now. Would be very grateful if y…

Answer: List of Deprecated Packages for Bioc3.18 by shepherl 3.8k

previously unannounced, COHCAP is not deprecated but removed with release 3.19. see [mailing list discussion](https://stat.ethz.ch/piperm…