Bioconductor Formula

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rnaseq deseq2 formula Limma

9.0 years ago AurelieMLB ▴ 50

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deseq2 design formula batch effect

updated 4.3 years ago by swbarnes2 ★ 1.3k • written 4.3 years ago by l.rijnberk • 0

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dexseq linear model formula

updated 8.5 years ago by Alejandro Reyes ★ 1.9k • written 8.5 years ago by Cornwell, Adam ▴ 110

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limma dose-response linear model model formula

updated 6.4 years ago by James W. MacDonald 65k • written 6.4 years ago by biominer ▴ 10

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deseq2 formula controls design

updated 4.7 years ago by Michael Love 42k • written 4.7 years ago by taveluz • 0

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DESeq2 twins design formula RNA-seq

6.5 years ago Simone • 0

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limma design RNA-seq formula twins

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by Simone • 0

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variance formula expression

updated 5.3 years ago by mikhael.manurung ▴ 270 • written 5.3 years ago by rina ▴ 30

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DESeq2 design formula matrix

updated 5.9 years ago by Michael Love 42k • written 5.9 years ago by t.kuilman ▴ 170

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BatchEffect batch RNASeqR formula DESeq2

updated 20 months ago by Michael Love 42k • written 20 months ago by estafana.t98 • 0

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deseq2 design formula

updated 3.5 years ago by Michael Love 42k • written 3.5 years ago by Bine ▴ 40

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Comment: deseq2 results by sajadahmad41454 • 0

could you please tell me if the results are fine or not? ![pca summary][1] ![pca plot][2] [1]: /media/images/ee7d8693-bcbe-4a7a-a566-d3…

Answer: normalization using Deseq2 by ATpoint ★ 4.1k

counts(dds, normalized=TRUE)

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I have tried what you suggested. I started with methylation loci. I created segment1 and segment2 but how to combine them bec…

Comment: EGSEA usage with microarray data (with vooma)? by Chris • 0

Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

> Any suggestions for methylation data segmentation? I think the same segmentation can be used.

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A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

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