Showing : gdc • reset
0
votes
11
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4.4k
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TCGAbiolinks GDCquery downloads a file that reads "message": "internal server error"
tcgabiolinks gdc
9.2 years ago jshelton • 0
19
votes
8
replies
4.7k
views
How to check the read length for all the TCGA data samples in GDC?
gdc tcga wes gdc data
updated 7.8 years ago by 21k • written 7.8 years ago by ▴ 120
7
votes
7
replies
2.3k
views
Using GenomicDataCommons R package to identify cases with both DNA methylation and gene expression data
R gdc rna-seq dna methylation
updated 7.2 years ago by 21k • written 7.2 years ago by ▴ 50
0
votes
4
replies
2.0k
views
problem for downloading TCGA data by TCGAbiolikns package
TCGAbiolinks TCGA GDC
6.1 years ago modarzi ▴ 10
4
votes
2
replies
1.7k
views
GenomicDataCommons request timeouts when cases() %>% ... %>% results_all()
genomicdatacommons tcga gdc rest http
updated 7.0 years ago by 21k • written 7.0 years ago by ▴ 20
0
votes
2
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4.7k
views
Extract gene expression values from GDCprepare object
tcgabiolinks tcga tcgadownload gdcprepare gdc
updated 8.8 years ago by ▴ 260 • written 9.0 years ago by • 0
3
votes
2
replies
3.6k
views
Difference in TCGA RNAseq expression values between GDC harmonized and legacy data
GDC TCGA tcgabiolinks
updated 3.8 years ago by • 0 • written 7.2 years ago by ▴ 10
1
vote
2
replies
2.1k
views
TCGA MAF (Mutations) data
TCGA MAF GDC snp mutations
updated 6.7 years ago by 21k • written 6.7 years ago by ▴ 160
0
votes
1
reply
4.3k
views
how to infer missing PAM50 molecular subtypes in TCGA-BRCA dataset downloaded with TCGABiolinks?
tcgabiolinks tcga-brca gdc pam50 rna-seq
7.8 years ago pfrancislyon • 0
0
votes
1
reply
1.0k
views
GenomicDataCommons: Retrieve patient data for RPPA samples
TCGA GenomicDataCommons GDC
written 2.6 years ago by ▴ 510
0
votes
0
replies
1.2k
views
Problem for downloading TCGA cancer data by TCGAbiolinks
TCGAbiolinks GDC TCGA
6.1 years ago modarzi ▴ 10
0
votes
0
replies
1.7k
views
Filter TCGAbiolinks by Gene in Query
tcgabiolinks filtering gdc TCGABiolinks rnaseq
6.0 years ago jam526 • 0
12 results • Page 1 of 1
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Comment: limpa analysis advice by Gordon Smyth 53k
Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …
Comment: limpa analysis advice by SamGG ▴ 360
Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…
Comment: Pairwise comparison of multiple groups with different base by ja569116 • 0
Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…
Comment: Are individual-mouse-based statistics possible in CellChat? by TikTsossakaas33ocissalpc • 0
Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Votes
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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