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gdcprepare
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1.5k
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Error in GDCDownload and GDCPrepare for TCGA-PAAD Dataset
GDCPrepare
GDCDownload
3.2 years ago
Manav
• 0
0
votes
0
replies
2.0k
views
GDCprepare error in TCGAbiolinks
tcgabiolinks
gdcprepare
differential expression
6.1 years ago
fawazfebin
▴ 60
4
votes
5
replies
3.4k
views
GDCprepare - error
TCGABiolinks
GDCprepare
6.4 years ago
vm
▴ 30
2
votes
2
replies
2.1k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks
GDCprepare
error
updated 6.4 years ago by
Tiago C. Silva
▴ 270 • written 6.4 years ago by
Talip
▴ 10
1
vote
5
replies
2.3k
views
Issue with TCGAbiolinks package.
TCGA
GDCprepare
6.8 years ago
salvocomplicazioni1
• 0
0
votes
2
replies
2.7k
views
GDCprepare stop working for some unknown reason
tcgabiolinks
gdcprepare
updated 7.0 years ago by
James W. MacDonald
68k • written 7.0 years ago by
ansari.sarabio
• 0
0
votes
0
replies
1.2k
views
Reasoning for illegal operation
tcgabiolinks
illegaloperation
gdcprepare
7.9 years ago
lisa8191
• 0
0
votes
1
reply
2.3k
views
How to get treatment information with TCGAbiolinks?
gdcprepare
tcgabiolinks
treatment_type
R
data extraction
updated 8.4 years ago by
Dario Strbenac
★ 1.6k • written 8.4 years ago by
newbie
• 0
0
votes
3
replies
1.8k
views
TCGA controlled data
R
tcgabiolinks
gdcprepare
8.5 years ago
ugandhar.ch1
• 0
0
votes
2
replies
4.5k
views
Extract gene expression values from GDCprepare object
tcgabiolinks
tcga
tcgadownload
gdcprepare
gdc
updated 8.7 years ago by
Tiago Chedraoui Silva
▴ 260 • written 8.8 years ago by
enigmargs
• 0
0
votes
8
replies
3.4k
views
TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks
gdcprepare
9.2 years ago • updated 9.1 years ago
sabarinath.chandrasekharan
▴ 10
0
votes
1
reply
1.6k
views
Error during GDCprepare
tcgabiolinks
gdcprepare
updated 9.2 years ago by
Tiago C. Silva
▴ 270 • written 9.2 years ago by
Mariana Boroni
▴ 10
12 results • Page
1 of 1
Recent ...
Replies
Comment: Post translational modifications and phosphoproteomics in limpa?
by
james.eapen
• 0
Thank you!
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
ATpoint
★ 5.0k
The donor effect is crystal clear, and absent in these suspicious samples. It strongly argues for a technical problem. If you really need s…
Answer: mzR-Rcpp compiler version issue
by
Laurent Gatto
1.6k
There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …
Comment: Identifying differentially expressed genes in individual samples from a large co
by
jamie.gearing
▴ 60
Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!
Comment: Co-occurrence Network Analysis between Algae and Bacteria
by
Stefano Mangiola
▴ 40
Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…
Votes
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
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