Bioconductor Gdcprepare

Showing : gdcprepare • reset

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GDCPrepare GDCDownload

3.3 years ago Manav • 0

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tcgabiolinks gdcprepare differential expression

6.2 years ago fawazfebin ▴ 60

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TCGABiolinks GDCprepare

6.4 years ago vm ▴ 30

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TCGAbiolinks GDCprepare error

updated 6.4 years ago by Tiago C. Silva ▴ 270 • written 6.4 years ago by Talip ▴ 10

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TCGA GDCprepare

6.8 years ago salvocomplicazioni1 • 0

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tcgabiolinks gdcprepare

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by ansari.sarabio • 0

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tcgabiolinks illegaloperation gdcprepare

8.0 years ago lisa8191 • 0

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gdcprepare tcgabiolinks treatment_type R data extraction

updated 8.5 years ago by Dario Strbenac ★ 1.6k • written 8.5 years ago by newbie • 0

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R tcgabiolinks gdcprepare

8.6 years ago ugandhar.ch1 • 0

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 8.7 years ago by Tiago Chedraoui Silva ▴ 260 • written 8.9 years ago by enigmargs • 0

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tcgabiolinks gdcprepare

9.2 years ago sabarinath.chandrasekharan ▴ 10

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1.6k

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tcgabiolinks gdcprepare

updated 9.3 years ago by Tiago C. Silva ▴ 270 • written 9.3 years ago by Mariana Boroni ▴ 10

12 results • Page 1 of 1

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Comment: p.adjust BH Question by TikTsoksocissalpc • 0

Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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