Bioconductor Gdcprepare

Showing : gdcprepare • reset

votes

replies

1.2k

views

GDCPrepare GDCDownload

2.6 years ago Manav • 0

votes

replies

1.8k

views

tcgabiolinks gdcprepare differential expression

5.4 years ago fawazfebin ▴ 60

votes

replies

3.1k

views

TCGABiolinks GDCprepare

5.7 years ago vm ▴ 30

votes

replies

1.9k

views

TCGAbiolinks GDCprepare error

updated 5.7 years ago by Tiago C. Silva ▴ 270 • written 5.7 years ago by Talip ▴ 10

vote

replies

2.0k

views

TCGA GDCprepare

6.1 years ago salvocomplicazioni1 • 0

votes

replies

2.3k

views

tcgabiolinks gdcprepare

updated 6.3 years ago by James W. MacDonald 68k • written 6.3 years ago by ansari.sarabio • 0

votes

replies

1.1k

views

tcgabiolinks illegaloperation gdcprepare

7.3 years ago lisa8191 • 0

votes

2.0k

views

gdcprepare tcgabiolinks treatment_type R data extraction

updated 7.8 years ago by Dario Strbenac ★ 1.6k • written 7.8 years ago by newbie • 0

votes

replies

1.6k

views

R tcgabiolinks gdcprepare

7.9 years ago ugandhar.ch1 • 0

votes

replies

4.2k

views

tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 8.0 years ago by Tiago Chedraoui Silva ▴ 260 • written 8.2 years ago by enigmargs • 0

votes

replies

3.1k

views

tcgabiolinks gdcprepare

8.5 years ago sabarinath.chandrasekharan ▴ 10

votes

1.4k

views

tcgabiolinks gdcprepare

updated 8.6 years ago by Tiago C. Silva ▴ 270 • written 8.6 years ago by Mariana Boroni ▴ 10

12 results • Page 1 of 1

Recent ...

Replies

Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

Awards • All