Showing : gdcprepare • reset
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Error in GDCDownload and GDCPrepare for TCGA-PAAD Dataset
GDCPrepare GDCDownload
3.3 years ago Manav • 0
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2.0k
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GDCprepare error in TCGAbiolinks
tcgabiolinks gdcprepare differential expression
6.2 years ago fawazfebin ▴ 60
4
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5
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3.5k
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GDCprepare - error
TCGABiolinks GDCprepare
6.5 years ago vm ▴ 30
2
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2
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2.1k
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TCGAbiolinks GDCprepare error
TCGAbiolinks GDCprepare error
updated 6.5 years ago by ▴ 270 • written 6.5 years ago by ▴ 10
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5
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2.4k
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Issue with TCGAbiolinks package.
TCGA GDCprepare
6.9 years ago salvocomplicazioni1 • 0
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2
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2.8k
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GDCprepare stop working for some unknown reason
tcgabiolinks gdcprepare
updated 7.1 years ago by 68k • written 7.1 years ago by • 0
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Reasoning for illegal operation
tcgabiolinks illegaloperation gdcprepare
8.1 years ago lisa8191 • 0
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1
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2.3k
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How to get treatment information with TCGAbiolinks?
gdcprepare tcgabiolinks treatment_type R data extraction
updated 8.5 years ago by ★ 1.6k • written 8.6 years ago by • 0
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3
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1.9k
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TCGA controlled data
R tcgabiolinks gdcprepare
8.6 years ago ugandhar.ch1 • 0
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4.6k
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Extract gene expression values from GDCprepare object
tcgabiolinks tcga tcgadownload gdcprepare gdc
updated 8.8 years ago by ▴ 260 • written 8.9 years ago by • 0
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8
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3.5k
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TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks gdcprepare
9.3 years ago sabarinath.chandrasekharan ▴ 10
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1
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1.6k
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Error during GDCprepare
tcgabiolinks gdcprepare
updated 9.3 years ago by ▴ 270 • written 9.4 years ago by ▴ 10
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Comment: Guitar R package requires update due to dependency GenomicFeatures by Sean Davis 21k
A great way to communicate such a nice troubleshooting and bug fix hint is to file an issue in github: https://github.com/lzcyzm/Guitar/iss…
Answer: Converting Probe IDs to HGNC symbols by Sean Davis 21k
The brainarray annotations are very confusing, as the IDs in the fData look like affymetrix probe IDs. To clarify, the brainarray project m…
Comment: How to do differential expresion across time serise with edgeR? by Gordon Smyth 53k
If you have fake replicates, then I think my code answers your question about how to run the edgeR time-course analysis. Regarding tutoria…
Comment: How to do differential expresion across time serise with edgeR? by petergrahamclark ▴ 10
The use case is kinetic model parameterisation. I'm actually a systems biologist not a bioinformatician. (which is why I'm struggling here)…
Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaasocissalpc • 0
Just like attending workshops helps you improve skills in a field, playing 8 Ball Pool helps sharpen your strategy and precision. You can d…
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Answer: Converting Probe IDs to HGNC symbols
Converting Probe IDs to HGNC symbols
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
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