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gdcprepare
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1.6k
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Error in GDCDownload and GDCPrepare for TCGA-PAAD Dataset
GDCPrepare
GDCDownload
3.4 years ago
Manav
• 0
0
votes
0
replies
2.0k
views
GDCprepare error in TCGAbiolinks
tcgabiolinks
gdcprepare
differential expression
6.2 years ago
fawazfebin
▴ 60
4
votes
5
replies
3.5k
views
GDCprepare - error
TCGABiolinks
GDCprepare
6.5 years ago
vm
▴ 30
2
votes
2
replies
2.1k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks
GDCprepare
error
updated 6.5 years ago by
Tiago C. Silva
▴ 270 • written 6.5 years ago by
Talip
▴ 10
1
vote
5
replies
2.4k
views
Issue with TCGAbiolinks package.
TCGA
GDCprepare
6.9 years ago
salvocomplicazioni1
• 0
0
votes
2
replies
2.8k
views
GDCprepare stop working for some unknown reason
tcgabiolinks
gdcprepare
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
ansari.sarabio
• 0
0
votes
0
replies
1.2k
views
Reasoning for illegal operation
tcgabiolinks
illegaloperation
gdcprepare
8.1 years ago
lisa8191
• 0
0
votes
1
reply
2.4k
views
How to get treatment information with TCGAbiolinks?
gdcprepare
tcgabiolinks
treatment_type
R
data extraction
updated 8.6 years ago by
Dario Strbenac
★ 1.6k • written 8.6 years ago by
newbie
• 0
0
votes
3
replies
1.9k
views
TCGA controlled data
R
tcgabiolinks
gdcprepare
8.6 years ago
ugandhar.ch1
• 0
0
votes
2
replies
4.6k
views
Extract gene expression values from GDCprepare object
tcgabiolinks
tcga
tcgadownload
gdcprepare
gdc
updated 8.8 years ago by
Tiago Chedraoui Silva
▴ 260 • written 8.9 years ago by
enigmargs
• 0
0
votes
8
replies
3.5k
views
TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks
gdcprepare
9.3 years ago
sabarinath.chandrasekharan
▴ 10
0
votes
1
reply
1.6k
views
Error during GDCprepare
tcgabiolinks
gdcprepare
updated 9.4 years ago by
Tiago C. Silva
▴ 270 • written 9.4 years ago by
Mariana Boroni
▴ 10
12 results • Page
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Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
by
Ludwig Geistlinger
▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
Votes
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
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