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gdcprepare
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1.1k
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Error in GDCDownload and GDCPrepare for TCGA-PAAD Dataset
GDCPrepare
GDCDownload
2.5 years ago
Manav
• 0
0
votes
0
replies
1.8k
views
GDCprepare error in TCGAbiolinks
tcgabiolinks
gdcprepare
differential expression
5.3 years ago
fawazfebin
▴ 60
4
votes
5
replies
3.0k
views
GDCprepare - error
TCGABiolinks
GDCprepare
5.6 years ago
vm
▴ 30
2
votes
2
replies
1.8k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks
GDCprepare
error
updated 5.6 years ago by
Tiago C. Silva
▴ 270 • written 5.6 years ago by
Talip
▴ 10
1
vote
5
replies
2.0k
views
Issue with TCGAbiolinks package.
TCGA
GDCprepare
6.0 years ago
salvocomplicazioni1
• 0
0
votes
2
replies
2.2k
views
GDCprepare stop working for some unknown reason
tcgabiolinks
gdcprepare
updated 6.2 years ago by
James W. MacDonald
68k • written 6.2 years ago by
ansari.sarabio
• 0
0
votes
0
replies
1.0k
views
Reasoning for illegal operation
tcgabiolinks
illegaloperation
gdcprepare
7.2 years ago
lisa8191
• 0
0
votes
1
reply
1.9k
views
How to get treatment information with TCGAbiolinks?
gdcprepare
tcgabiolinks
treatment_type
R
data extraction
updated 7.7 years ago by
Dario Strbenac
★ 1.6k • written 7.7 years ago by
newbie
• 0
0
votes
3
replies
1.6k
views
TCGA controlled data
R
tcgabiolinks
gdcprepare
7.8 years ago
ugandhar.ch1
• 0
0
votes
2
replies
4.1k
views
Extract gene expression values from GDCprepare object
tcgabiolinks
tcga
tcgadownload
gdcprepare
gdc
updated 7.9 years ago by
Tiago Chedraoui Silva
▴ 260 • written 8.0 years ago by
enigmargs
• 0
0
votes
8
replies
3.1k
views
TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks
gdcprepare
8.4 years ago
sabarinath.chandrasekharan
▴ 10
0
votes
1
reply
1.4k
views
Error during GDCprepare
tcgabiolinks
gdcprepare
updated 8.5 years ago by
Tiago C. Silva
▴ 270 • written 8.5 years ago by
Mariana Boroni
▴ 10
12 results • Page
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Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
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This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
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Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
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by
ingrid.h
• 0
Yes I have seen it, thanks.
Comment: Store Matrix in DataFrame Cell
by
Dario Strbenac
★ 1.6k
It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …
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