Bioconductor GeneLenDataBase

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922

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geneLenDataBase ChAMP

updated 15 months ago by shepherl 4.2k • written 15 months ago by Fang • 0

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707

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geneLenDataBase

updated 3.5 years ago by Kevin Blighe ★ 4.0k • written 3.5 years ago by Prerna • 0

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2.2k

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genelendatabase goseq

updated 9.7 years ago by Nadia Davidson ▴ 320 • written 9.7 years ago by Mehmet Ilyas Cosacak • 0

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3.7k

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goseq geneLenDataBase bioclite rstudio

updated 10.0 years ago by Martin Morgan 25k • written 10.0 years ago by amyfm ▴ 10

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1.7k

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goseq genelendatabase

10.2 years ago FeiYian Yoong ▴ 30

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2.5k

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geneLenDataBase mm10

updated 10.7 years ago by Hervé Pagès 16k • written 10.7 years ago by Robert K. Bradley ▴ 40

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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