Bioconductor Geneexpression

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BiocWorkflowTools BiomedicalInformatics GeneExpression

updated 10 weeks ago by James W. MacDonald 68k • written 10 weeks ago by Kiana • 0

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Microarray WGCNA GeneExpression

updated 3 months ago by ATpoint ★ 4.8k • written 4 months ago by Reuben • 0

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ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression

updated 6 months ago by James W. MacDonald 68k • written 6 months ago by Piotr.Keller • 0

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GeneExpression DESeq2 TimeCourse

updated 6 months ago by Michael Love 43k • written 6 months ago by Jason • 0

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Comment: FlowSOM is unable to create Output by EvangelinePope • 0

I will remember it, Thank you so much for sharing.

Answer: Limma suqeezeVar by Gordon Smyth 52k

I am not quite clear why you're not using the limma package directly, because it will compute all the variances and the df automatically fo…

Comment: Discrepancies in normalised count data vs unnormalised by swbarnes2 ★ 1.4k

Well, that's going to make each sample normalize quite differently. So you should expect large difference between normalized and unnormali…

Comment: Can't install BioC packages (and manager) behind firewall by Marcel Ramos 700

Hi Delphine, Please make sure that your SSL certificates are up to date. Check with your system's administrator. Your browser may be usin…

Comment: Limma trend with limpa by Alejandro • 0

Dear Gordon, Thank you very much!

Votes

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

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