Showing : geneexpression • reset
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 20 days ago by ★ 2.5k • written 27 days ago by • 0
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1
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239
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DESeq2 after Seurat analysis on integrated datasets
DESeq2 SingleCell GeneExpression Seurat
updated 6 weeks ago by ★ 2.5k • written 6 weeks ago by • 0
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Comparing different method for DESEQ2
DESeq2 GeneExpression
updated 6 months ago by 39k • written 6 months ago by • 0
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CountOverlap
GeneExpression ChIPSeqData
updated 6 months ago by 62k • written 6 months ago by ▴ 20
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Free Gibbson energy RNA doublex
GeneExpression RNAinteract
7 months ago Tamina • 0
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186
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Error while running Case study n. 3: Integration of methylation and expression for ACC
geneexpression methylation
8 months ago hlee • 0
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412
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Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression GeneExpression R enrichment DEGseq
updated 8 months ago by ★ 1.2k • written 8 months ago by • 0
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206
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Error "DESeqDataSetFromMatrix" function not found
GeneExpression
updated 9 months ago by ▴ 700 • written 9 months ago by • 0
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267
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Aggregate differentially expressed genes across all contrast results using DEVis
DifferentialExpression NanoporeRNASeq DESeq2 GeneExpression DEVis
updated 10 months ago by 62k • written 10 months ago by • 0
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1
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384
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Error while using champ.SVD function
GeneExpression
updated 11 months ago by ▴ 700 • written 11 months ago by • 0
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1.1k
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GDCprepare of STAR - counts
GeneExpression TCGAbiolinks
updated 6 months ago by • 0 • written 11 months ago by • 0
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389
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Volcano plot: Putting calculated values in legend
GeneExpression
updated 11 months ago by 3.8k • written 11 months ago by • 0
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Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression DESeq2 ExpressionData
updated 12 months ago by • 0 • written 12 months ago by ▴ 10
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2
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1.2k
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Using DESeq2 for Differential Expression Analysis with Interaction Term
DifferentialExpression GeneExpression DESeq2 Design()
17 months ago p.l.chen • 0
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2
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Deseq2 and log2foldchange cutoffs- How to get differentially expressed genes?
DifferentialExpression GeneExpression DESeq2 R
updated 17 months ago by ★ 2.5k • written 18 months ago by ▴ 10
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Gene expression in R
limma edgeR Biobase GeneExpression
18 months ago sogol.bouyeh • 0
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2
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933
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DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
21 months ago SUMIT • 0
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18
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1.5k
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DESeq2 comparison two cell types and two genotypes
GeneExpressionWorkflow DESeq2 GeneExpression
updated 22 months ago by 39k • written 23 months ago by • 0
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3
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571
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DESeq analysis with Biological replicate.
DESeq2 ExpressionData GeneExpression
updated 2.2 years ago by 39k • written 2.2 years ago by • 0
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1
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475
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Accounting for fish body mass in DE?
GeneExpression edgeR
updated 2.2 years ago by 62k • written 2.2 years ago by • 0
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475
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Find significant genes related to a specific disease
GeneExpression RNASeqR limma
updated 2.3 years ago by ▴ 490 • written 2.3 years ago by • 0
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3
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573
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Troubles implementing LIMMA for paired samples (before/after treatment) comparaisons
GeneExpression R limma MultipleComparison
updated 2.3 years ago by 62k • written 2.3 years ago by • 0
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
2.4 years ago coobzie • 0
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5
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8.3k
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Calculating FPKM from raw counts data using fpkm() in deseq2
deseq2 r fpkm() geneexpression
updated 4.5 years ago by 39k • written 4.5 years ago by ▴ 50
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4
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1.3k
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Need help loading gene expression data into R using either ArrayExpress or GEOquery R packages
arrayexpress geoquery geneexpression
updated 5.0 years ago by 21k • written 5.0 years ago by ▴ 10
3
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1
reply
1.1k
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Processing several GSM from GEO database using Barcode and fRMA
frma barcode geneexpression gsm ncbi geo
updated 5.4 years ago by ▴ 830 • written 5.4 years ago by • 0
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4
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1.4k
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ddCT Package for StepOnePlus qPCR output
qPCR ddCt geneexpression
updated 5.7 years ago by ▴ 120 • written 5.7 years ago by ▴ 60
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3
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885
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General suggestions regarding gene expression
geneexpression
updated 6.1 years ago by 47k • written 6.1 years ago by • 0
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653
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Where or how to find the gene interaction with itself?
microarray gene interaction geneexpression
6.3 years ago shaheryar • 0
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0
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908
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Error in SAMseq analysis with R
r samseq microarray rnaseq geneexpression
6.6 years ago namilio • 0
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0
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890
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Methylation and gene expression
methylation geneexpression
6.6 years ago Asma rabe ▴ 290
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2
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809
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Methylation and gene expression data
methylation geneexpression
updated 6.9 years ago by ▴ 130 • written 6.9 years ago by ▴ 290
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3
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1.2k
views
error in drawing MDS plot for eset
MDSplot geneexpression insilicomerging
updated 7.0 years ago by 62k • written 7.0 years ago by ▴ 20
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6
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1.5k
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how to deal the effect of enormous gene expression?
deseq2 rnaseq tomato geneexpression
updated 7.1 years ago by 39k • written 7.1 years ago by • 0
0
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1
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980
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Error in MetaQC R package.
r metaqc microarray geneexpression
7.3 years ago Agaz Hussain Wani ▴ 260
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3
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1.3k
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problem with WGCNA
geneexpression
updated 7.4 years ago by ★ 2.7k • written 7.4 years ago by • 0
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5
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1.2k
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heatmap in R
r language microarray geneexpression
updated 7.6 years ago by ▴ 990 • written 7.6 years ago by • 0
1
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1
reply
895
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gene expression data analysis
microarray geneexpression
updated 7.6 years ago by 62k • written 7.6 years ago by • 0
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1
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4.7k
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NA p and p adjusted value
geneexpression
updated 7.6 years ago by ★ 2.7k • written 7.6 years ago by • 0
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2
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4.8k
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explanation of makeContrasts function of limma package
limma microarray R geneexpression
updated 7.7 years ago by ★ 28k • written 7.7 years ago by ▴ 10
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3
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10.0k
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How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 7.7 years ago by ▴ 810 • written 7.7 years ago by ▴ 10
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0
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832
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Using segAnglePo() for a set of genes
geneexpression genesetenrichment segAnglePo
8.3 years ago Peter.Wood • 0
3
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5
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7.0k
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limma voom accessing normalised counts tables
limma rnaseq geneexpression voom counts
updated 8.4 years ago by 13k • written 8.4 years ago by ▴ 10
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7
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8.5k
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DESeq2 timecourse - How to set the experimental design
deseq2 geneexpression timecourse
updated 8.5 years ago by 13k • written 8.5 years ago by ▴ 10
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2
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3.5k
views
Selecting genes based on expressional variance
geneexpression wgcna rnaseq
updated 8.5 years ago by 1.6k • written 8.5 years ago by ▴ 240
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1.2k
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easyRNASeq: Number of total counts
GeneExpression RNASeq Genetics Coverage Normalization BSgenome Biobase Biostrings biomaRt
9.0 years ago Guest User ★ 12k
46 results • Page 1 of 1
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Replies
Comment: Help with Error in DiffBind by Rory Stark ★ 4.7k
Apologies. The first line should be result <- dba(sampleSheet=samples) I've gone back and edited previous replies to reflect this.
Answer: *** caught segfault *** , cause 'memory not mapped' by James W. MacDonald 62k
You are unfortunately running out of RAM. As you note, you could possibly use `frma`, after generating frozen vectors using the `frmaTools`…
Comment: Help with Error in DiffBind by Chris • 0
Thanks Rory! result <- dba(samples) Error in if ((length(callers) == 1) & (callers[1] == "counts")) { : argument is of len…
Answer: Help with Error in DiffBind by Rory Stark ★ 4.7k
In your case, with only two replicates in each sample group, you can not perform a default analysis using only `dba.analyze()`. I suggest t…
Comment: Help with Error in DiffBind by Rory Stark ★ 4.7k
Looks like you should either delete the file > /labs/PI/atacseq_output_03172023/bwa/merged_library/DISEASED_REP2.mLb.clN.sorted.bam.bai …
Votes
Comment: Help with Error in DiffBind
WGCNA: Module preservation vs consensus analysis
WGCNA: Module preservation vs consensus analysis
Answer: Help with Error in DiffBind
Comment: Help with Error in DiffBind
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