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genomicfiles
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Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions
Basic4Cseq
DNASeq
GenomicFiles
2.9 years ago
koushik
• 0
2
votes
6
replies
1.3k
views
memory leak when subsampling BAM
GenomicFiles
ShortRead
Rsamtools
3.3 years ago
robmaz77
▴ 20
1
vote
2
replies
757
views
The metadata from rowRanges is missing in the MAP function of GenomicFiles.
GenomicFiles
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
Qiang
▴ 80
3
votes
2
replies
986
views
ranges input for GenomicFiles
genomicfiles
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
Qiang
▴ 80
3
votes
2
replies
1.1k
views
Passing multiple arguments (like mapply) to the MAP-function in GenomicFiles.
genomicfiles
reduceByRange
updated 6.7 years ago by
Valerie Obenchain
★ 6.8k • written 6.7 years ago by
maltethodberg
▴ 180
3
votes
3
replies
1.1k
views
Parallel reading of Vcfs using VcfStack/RangedVcfStack
GenomicFiles
BiocParallel
updated 6.9 years ago by
shepherl
3.9k • written 7.0 years ago by
m.van_iterson
▴ 20
4
votes
2
replies
1.3k
views
readGAlignmentPairs not working correctly when reading a bam file by chunks
rsamtools
genomicalignments
genomicfiles
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
jfiksel
▴ 30
1
vote
1
reply
1.4k
views
How to randomly sample bam files obtaining a subset of information (ex: binning locations)
genomicfiles
rsamtools
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
victoriaccorey
▴ 10
2
votes
2
replies
2.6k
views
How to randomly sample BAM files
rsamtools
genomicalignments
genomicfiles
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
Welliton de Souza
▴ 70
0
votes
0
replies
992
views
[Bioc-devel] AnnotatioDbi Biostrings load order breaks GenomicFiles summary method
GO
Biostrings
rtracklayer
GenomicRanges
BiocParallel
GenomicFiles
9.7 years ago
Dan Tenenbaum
★ 8.2k
10 results • Page
1 of 1
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Comment: slingshot: error with plot3d.SlingshotDataSet
by
Happiness
• 0
Hi please i am encountering similar issue how did you fix it. Here is the code: ## Run Slingshot p3.neuron.sds <- slingshot(Embeddings(…
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
mohammedtoufiq91
▴ 10
https://support.bioconductor.org/u/5106/ thank you very much.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Thank you so much!
Answer: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Votes
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
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