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genvisr
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2
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5
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2.7k
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GenVisR Installation error message
genvisR
8.2 years ago
Deep Adhya
▴ 20
0
votes
4
replies
1.9k
views
GenVisR- cnSpec CNV plot
GenVisR
6.3 years ago
daijieqiong
▴ 10
0
votes
1
reply
1.1k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr
genvisr
waterfall
mutation
updated 5.4 years ago by
zlskidmore
▴ 30 • written 5.5 years ago by
ZihaoXing
• 0
3
votes
10
replies
2.8k
views
error in package GenVisR while installing
GenVisR
GenVis
updated 5 months ago by
zlskidmore
▴ 30 • written 21 months ago by
abhisikta
• 0
0
votes
2
replies
1.2k
views
an error in TvTi: package GenVisR
GenVisR
updated 7.2 years ago by
zlskidmore
▴ 30 • written 7.2 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.1k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 23 months ago by
Hervé Pagès
16k • written 23 months ago by
Michel
• 0
0
votes
0
replies
1.6k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
23 months ago
e
• 0
0
votes
0
replies
398
views
GenVisR - adding on genomic positions to CovGen graph
GenVisR
GenCov
19 months ago
Amy_
• 0
0
votes
2
replies
1.1k
views
Copy Number plot cnSpec - how to order samples
genvisr
5.9 years ago
cedric.vmdl
• 0
0
votes
1
reply
826
views
Issues with lohSpec
genvisr
lohSpec
5.8 years ago
dharia.priyadarshani
• 0
0
votes
0
replies
910
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
4.6 years ago
sheneicechang
• 0
0
votes
1
reply
703
views
Adding layer to legend in waterfall plot
GenVisR
ggplot2
waterfall
4.5 years ago
sheneicechang
• 0
0
votes
1
reply
1.0k
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 3.5 years ago by
zlskidmore
▴ 30 • written 3.5 years ago by
Jeni
▴ 10
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
You seem to have the misunderstanding that you can change the design matrix but keep all the other code unchanged. The contrasts are comput…
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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