Bioconductor Geoquery error message

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geoquery geoquery error message

updated 6.8 years ago by Sean Davis 21k • written 6.8 years ago by anthony.nash ▴ 20

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R GEO geoquery geoquery error message Tutorial

6.8 years ago martinguerrerog89 ▴ 20

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geoquery error message

updated 7.1 years ago by Vegard Nygaard ▴ 110 • written 7.1 years ago by lallo_92 • 0

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geoquery error message GEOquery GSE GEO

7.2 years ago Barah ▴ 20

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geoquery geoquery error message

updated 8.2 years ago by Sean Davis 21k • written 8.2 years ago by cynthiak14 ▴ 10

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GEOquery error message

updated 9.6 years ago by Sean Davis 21k • written 9.6 years ago by jianwang2010 ▴ 10

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Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

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A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

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Teacher to Gordon Smyth 51k

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