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Comment: ANOVA like approach of edgeR
by
Yunshun Chen
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870
If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …
Comment: ANOVA like approach of edgeR
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SamGG
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Simply remove the cell type from the model.
design <- model.matrix(~targets$Status)
Answer: ANOVA like approach of edgeR
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Yunshun Chen
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You could try the followings:
> design <- model.matrix(~ 0 + group)
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Answer: Identical samples after deseq2 batch effect removal
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Thanks Michael, so is there a way to work around this issue?
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The updated version worked well on my data. Thank you!
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