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Showing :
getGEO
•
reset
2
votes
6
replies
1.5k
views
error reading GSE using getGEO()
r
geo
getgeo
5.9 years ago
jaleh.amo
• 0
2
votes
2
replies
1.2k
views
getGEO from GEOquery doesn't return probesets
geoquery
getgeo
probeset
updated 6.2 years ago by
James W. MacDonald
66k • written 6.2 years ago by
dnedveck
• 0
3
votes
2
replies
3.2k
views
getGEO error when trying to download a series matrix file
GEOquery
getGEO
6.3 years ago
rubi
▴ 110
3
votes
4
replies
1.4k
views
getGEO Error: Duplicate identifiers for rows
geoquery
getgeo
updated 6.3 years ago by
Sean Davis
21k • written 6.3 years ago by
umahajan
▴ 10
3
votes
11
replies
4.1k
views
GEOquery http:// url error
geoquery
error
getgeo
microarray
geo
updated 6.4 years ago by
Sean Davis
21k • written 7.2 years ago by
jblack29
• 0
3
votes
1
reply
1.2k
views
getGEO Error: Duplicate identifiers for rows
getGEO
updated 6.5 years ago by
James W. MacDonald
66k • written 6.6 years ago by
cg
▴ 10
0
votes
2
replies
1.7k
views
Error in GEOquery
geoquery
getgeo
R
updated 7.2 years ago by
James W. MacDonald
66k • written 7.2 years ago by
rk489
• 0
2
votes
2
replies
1.6k
views
Problem with GEOquery R package in Windows when trying to download specific GEO processed data
geoquery
affymetrix microarrays
windows8
getGEO
updated 7.2 years ago by
Sean Davis
21k • written 7.2 years ago by
svlachavas
▴ 830
2
votes
2
replies
2.2k
views
GEOquery error in downloading SOFT files
geoquery
getgeo
GEO
7.6 years ago
hzc363
▴ 20
0
votes
2
replies
2.0k
views
Why getGEO returns an expressionset with zero features ?
getgeo
8.3 years ago
xishan78
• 0
0
votes
0
replies
969
views
getGEO is taking too long time for a file that is already locally cached
getgeo
r
8.3 years ago
alptaciroglu
▴ 50
0
votes
1
reply
3.7k
views
getGEO Failed to connect to ftp.ncbi.nlm.nih.gov port 21: Timed out
getGEO
8.3 years ago
maedakus
▴ 10
2
votes
4
replies
1.6k
views
GEOquery: Shifted data columns in phenotype data
geoquery
getgeo
8.4 years ago
rfb
• 0
2
votes
2
replies
1.8k
views
getGEO error
getgeo
geoquery
updated 8.4 years ago by
Gordon Smyth
51k • written 8.4 years ago by
maedakus
▴ 10
4
votes
8
replies
7.1k
views
getGEO - cannot Open URL issue
getGEO
R
GEOquery
8.7 years ago
alptaciroglu
▴ 50
2
votes
4
replies
2.9k
views
getGEO function not identifying local file
geoquery
getGEO
8.8 years ago
Prasanth
▴ 20
16 results • Page
1 of 1
Recent ...
Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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