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getseq
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reset
1
vote
3
replies
1.4k
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NAs values when importing BED file using import function
rtracklayer
NA
BED
getseq
8.4 years ago
Dimitris Polychronopoulos
▴ 80
1
vote
3
replies
1.7k
views
Does there exists a getSeq like function for ranges that wrap around end to start ?
circulargenome
ORFik
getSeq
3.1 years ago
hauken_heyken
▴ 80
0
votes
2
replies
2.2k
views
BSGenome::getSeq gives error: Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append)
bsgenome
getseq
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
dborgesrmit
• 0
1
vote
2
replies
1.4k
views
Error in BSGenome "getSeq" function
R
bsgenome
getseq
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
pm16057
• 0
4
votes
1
reply
1.7k
views
Getting "negative length vectors are not allowed" error in BSgenome::getSeq
BSgenome
getSeq
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
rubi
▴ 110
3
votes
1
reply
5.3k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 7.8 years ago by
Hervé Pagès
16k • written 7.8 years ago by
TimothéeFlutre
▴ 80
0
votes
1
reply
715
views
Error Message in signeR
signeR
getseq
updated 5.0 years ago by
renan.valieris
▴ 10 • written 5.0 years ago by
TRASA
• 0
7 results • Page
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Replies
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
• 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Comment: Help with error using camera() in limma
by
James W. MacDonald
65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
Votes
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
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