Biostar BED

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readTranscriptFeatures R genomation bed

updated 10 weeks ago by James W. MacDonald 62k • written 11 weeks ago by sat • 0

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428

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bed bigBed rtracklayer ucsc

4 months ago L ▴ 50

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1.8k

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rtracklayer R bed

updated 11 weeks ago by Walters • 0 • written 8 months ago by L ▴ 50

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474

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mappability bed python

updated 14 months ago by James W. MacDonald 62k • written 14 months ago by the • 0

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rtracklayer bed

updated 2.1 years ago by merv ▴ 60 • written 7.0 years ago by Ryan C. Thompson 7.8k

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830

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rtracklayer bed genomicranges

updated 4.4 years ago by Michael Lawrence 11k • written 4.4 years ago by foehn ▴ 80

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sushi bed

4.5 years ago maltethodberg ▴ 160

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916

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bed vcf

updated 4.8 years ago by GENOMIC_region • 0 • written 4.8 years ago by Bogdan ▴ 660

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910

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granges bed genomicranges genomeintervals deseq2

5.2 years ago rbronste ▴ 60

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rtracklayer bed software error

updated 5.5 years ago by Michael Lawrence 11k • written 5.5 years ago by Ryan C. Thompson 7.8k

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1.3k

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coverage bed

updated 5.6 years ago by James W. MacDonald 62k • written 5.6 years ago by sgupt46 • 0

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914

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annotationhub bugs encode bed

6.3 years ago wcstcyx ▴ 30

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2.0k

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rtracklayer import bed

updated 7.0 years ago by Michael Lawrence 11k • written 7.0 years ago by Peter Hickey ▴ 640

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1.3k

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gviz BED Ucsc UcscTrack

7.2 years ago Andy91 ▴ 60

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rtracklayer NA BED getseq

7.4 years ago Dimitris Polychronopoulos ▴ 80

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1.6k

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readvcf plink file conversion bed bioc-devel

8.0 years ago mjsduncan • 0

16 results • Page 1 of 1

Recent ...

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Answer: RPPA data (Proteomics analysis) by Gordon Smyth 47k

Manipulating results is easy in R and limma. Just read the examples and documentation, for example `help("topTable")`. The limma results i…

Comment: Question about filter by expression (filterByExpr) in edgeR by Gordon Smyth 47k

Something like what? I advised you to use "all treatment factors" and use the "whole design matrix" but you've done the opposite, omitting…

Comment: Full list of differential genes not obtained in topTable by Ankita • 0

thank you I tried it and it worked.

Answer: Full list of differential genes not obtained in topTable by Gordon Smyth 47k

When you have a question, the first thing you can do to help yourself is to read the help page for the function, in this case `?topTable`. …

Comment: Question about filter by expression (filterByExpr) in edgeR by mohammedtoufiq91 ▴ 10

@gordonsmyth Meaning, something like the the below? filterByExpr (y)

Votes

A: Factor levels and Differential Expression analysis: Error in `contrasts<-`(`*tmp