Biostar Glmlrt()

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1.3k

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EdgeR glmlrt() ql f-test

6.4 years ago • updated 5.7 years ago elineverbon ▴ 20

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848

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edger differential gene expression glmlrt()

6.3 years ago • updated 6.2 years ago simarsidhu25 • 0

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2.8k

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edger rnaseq glmlrt()

updated 8.0 years ago by James W. MacDonald 62k • written 8.0 years ago by MBWatson • 0

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1.0k

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edger design matrix glmlrt() glmQFTest() paired design

4.4 years ago oakhamwolf • 0

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2.2k

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edger differential gene expression glmlrt()

6.3 years ago simarsidhu25 • 0

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2.9k

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edger contrast covariate glmlrt()

5.9 years ago Jeff Skinner • 0

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1.6k

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edger glmlrt() differential expression design and contrast matrix

updated 7.7 years ago by Gordon Smyth 47k • written 7.7 years ago by carlgdeboer • 0

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3.0k

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edger glmfit glmlrt()

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by cadeans • 0

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6.6k

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edgeR glmLRT() multiple factor design multiple testing correction

updated 8.2 years ago by Aaron Lun ★ 28k • written 8.2 years ago by Ekarl2 ▴ 80

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Comment: Time-course, comparison of two groups by boczniak767 ▴ 720

As an exercise I've tried to analyze simpler but similar experiment. The data is from real experiment (E-MTAB-11224) comparing wild type an…

Answer: How to getting synonymous SNPs from BiomaRt before timing out? by James W. MacDonald 62k

Asking for multiple things at once will tend to blow out your results, as you will get every possible combination. ``` > options(timeou…

Comment: Definition of disease_subtype abbreviations by Lucas Schiffer ▴ 240

Hi Sehyun, I do not know myself and can only find one reference in the [template.csv](https://github.com/waldronlab/curatedMetagenomicDataC…

Answer: Are polynomial contrasts for a time factor possible in DESeq2? by ATpoint ★ 2.4k

As you can use a model.matrix() as input for the design you can use a great variety of models. A great read is this work from Ritchie/Smyth…

Comment: does anyone how to create rarefaction curves from a phyloseq object? by RMiller • 0

I am not sure what you have tried, but the "vegan" library (package) has the ability to do rarefaction. So make sure to load `library("veg…

Votes

Answer: Are polynomial contrasts for a time factor possible in DESeq2?

Are polynomial contrasts for a time factor possible in DESeq2?

Answer: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

A: Pathway analysis of differentially methylated CpGs

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Scholar to Gordon Smyth 47k

Popular Question to Robert Castelo ★ 3.0k