Bioconductor Glmlrt()

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2.1k

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EdgeR glmlrt() ql f-test

8.1 years ago • updated 7.4 years ago elineverbon ▴ 20

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1.3k

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edger differential gene expression glmlrt()

8.0 years ago simarsidhu25 • 0

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4.2k

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edger rnaseq glmlrt()

updated 9.7 years ago by James W. MacDonald 67k • written 9.7 years ago by MBWatson • 0

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1.5k

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edger design matrix glmlrt() glmQFTest() paired design

6.1 years ago oakhamwolf • 0

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3.1k

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edger differential gene expression glmlrt()

8.0 years ago simarsidhu25 • 0

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3.9k

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edger contrast covariate glmlrt()

7.7 years ago Jeff Skinner • 0

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2.1k

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edger glmlrt() differential expression design and contrast matrix

updated 9.5 years ago by Gordon Smyth 52k • written 9.5 years ago by carlgdeboer • 0

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3.9k

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edger glmfit glmlrt()

updated 9.1 years ago by Aaron Lun ★ 28k • written 9.1 years ago by cadeans • 0

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7.5k

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edgeR glmLRT() multiple factor design multiple testing correction

updated 9.9 years ago by Aaron Lun ★ 28k • written 9.9 years ago by Ekarl2 ▴ 80

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Comment: Running multiple KNN queries in parallel by SamGG ▴ 360

Thank you for your detailed answer, I appreciate it and your work.

Answer: Running multiple KNN queries in parallel by Aaron Lun ★ 28k

That is correct - you can't pass the prebuilt objects to different processes. Maybe `MulticoreParam()` might work on POSIX systems but I'm …

Answer: RSubread output significantly different from bash Subread output by Gordon Smyth 52k

The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…

Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square by Michael Love 43k

I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…

Comment: sva: get a sv for RIN scores by gabriel.hoffman ▴ 170

Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.

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Answer: Running multiple KNN queries in parallel

Answer: RSubread output significantly different from bash Subread output

Answer: How to annotate a limma Elist raw class object with an annotation file

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