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gmapr
•
reset
0
votes
5
replies
1.8k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews
VariantAnnotation
Annotation
biocViews
Rsubread
VariantAnnotation
gmapR
BiocViews
10.4 years ago
Thomas Girke
★ 1.7k
0
votes
3
replies
2.5k
views
Problems to create GmapGenome - gmapR
gmapR
GmapGenome
error
create
9.0 years ago • updated 8.9 years ago
lelemraposo
• 0
0
votes
1
reply
1.3k
views
gmapR problem using a GmapGenome package with gsnap()
GO
BSgenome
BSgenome
gmapR
GO
BSgenome
BSgenome
gmapR
updated 11.0 years ago by
Michael Lawrence
★ 11k • written 11.0 years ago by
Robert Castelo
★ 3.3k
0
votes
1
reply
556
views
gmapR install failed
gmapR
updated 3.5 years ago by
Martin Morgan
25k • written 3.5 years ago by
conbward
• 0
0
votes
2
replies
1.2k
views
where is exonsOnTP53Genome defined
gmapR
gmapR
updated 11.2 years ago by
Martin Morgan
25k • written 11.2 years ago by
Guest User
★ 13k
0
votes
3
replies
938
views
cmetindex missing in gmapr? Not possible to do bisulfite alignments
gmapr
updated 6.5 years ago by
Michael Lawrence
★ 11k • written 6.5 years ago by
karl.nordstroem
• 0
0
votes
5
replies
1.2k
views
Error in gmapR: gsnap not functioning
software error
gmapr
updated 5.5 years ago by
Michael Lawrence
★ 11k • written 5.5 years ago by
Amer Ghalawinji
• 0
1
vote
4
replies
987
views
How can I create a GmapGenome that doesn't start at index 1?
gmapR
5.2 years ago
Kyle Johnsen
▴ 30
0
votes
2
replies
2.2k
views
gmapR/gsnap crashes
gmapR
gmapR
updated 11.2 years ago by
Michael Lawrence
★ 11k • written 11.2 years ago by
Tim Triche
★ 4.2k
0
votes
10
replies
1.9k
views
Running gmap tool via gmapR package?
gmapR
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
Thomas Sandmann
▴ 90
1
vote
4
replies
1.2k
views
Create a GmapGenome from a FaFile from AnnotationHub
gmapr
gmapgenome
annotationhub
fafile
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
Johannes Rainer
★ 2.0k
1
vote
17
replies
1.9k
views
VariantTools problem causing R crash
varianttools
gmapr
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
Johannes Rainer
★ 2.0k
3
votes
6
replies
1.4k
views
gmapR fills my tmp directory
gmapr
gmapgenome
updated 8.3 years ago by
Michael Lawrence
★ 11k • written 8.3 years ago by
sean.taylor
• 0
0
votes
4
replies
1.5k
views
Can I create a GmapGenome with a relative file path?
gmapgenome
gmapr
fastafile
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
Kyle Johnsen
▴ 30
0
votes
0
replies
1.5k
views
gmapR for R 3.0.0 installation problem?
gmapR
gmapR
11.1 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
902
views
gmapR: GsnapParam, does is support the --splicesites (-s) flag
gmapR
9.3 years ago
Chao-Jen Wong
▴ 580
0
votes
0
replies
1.1k
views
regarding mapping package
Cancer
genomes
Rsubread
gmapR
Cancer
genomes
Rsubread
gmapR
11.7 years ago
Martin Morgan
25k
1
vote
4
replies
1.2k
views
gmapR failure to build TP53Genome in osx
gmapR
7.4 years ago
jls2282
• 0
18 results • Page
1 of 1
Recent ...
Replies
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga
by
James W. MacDonald
65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Votes
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
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