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3.7k

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clusterProfiler GO GO enrichment genesetenrichment

updated 6 weeks ago by jandrade • 0 • written 6.4 years ago by Huang, Lei [BSD] - CRI ▴ 20

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256

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 8 weeks ago by belinda.phipson ▴ 40 • written 8 weeks ago by s.malik • 0

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352

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GO limma CAMERA

updated 11 weeks ago by Gordon Smyth 50k • written 12 weeks ago by Tyler Sagendorf ▴ 10

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405

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GO EnrichmentBrowser

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by prity6459 • 0

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561

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GO ensembldb

6 months ago Rockbar • 0

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422

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go DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by Alvin • 0

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619

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GO biomaRt

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by cstorer • 0

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5.0k

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clusterProfiler AnnotationHub GO uniprot

updated 12 weeks ago by Guido Hooiveld ★ 3.9k • written 3.3 years ago by Alberto • 0

8 results • Page 1 of 1

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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

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