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5.1k

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clusterProfiler AnnotationHub GO uniprot

updated 3 months ago by Guido Hooiveld ★ 4.0k • written 3.3 years ago by Alberto • 0

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3.8k

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clusterProfiler GO GO enrichment genesetenrichment

updated 8 weeks ago by jandrade • 0 • written 6.4 years ago by Huang, Lei [BSD] - CRI ▴ 20

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593

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GO ensembldb

7 months ago Rockbar • 0

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394

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GO limma CAMERA

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by Tyler Sagendorf ▴ 10

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479

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GO EnrichmentBrowser

updated 3 months ago by James W. MacDonald 66k • written 3 months ago by prity6459 • 0

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640

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GO biomaRt

updated 10 months ago by James W. MacDonald 66k • written 10 months ago by cstorer • 0

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442

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go DESeq2

updated 8 months ago by James W. MacDonald 66k • written 8 months ago by Alvin • 0

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295

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 11 weeks ago by belinda.phipson ▴ 40 • written 11 weeks ago by s.malik • 0

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GO KEGG gage pathview

6 days ago danalvoronov ▴ 10

9 results • Page 1 of 1

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Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by mohammedtoufiq91 ▴ 10

https://support.bioconductor.org/u/5106/ thank you very much.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Thank you so much!

Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k

Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…

Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10

Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …

Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k

The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…

Votes

Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data

Comment: Ensembl plants at annotationHub?

how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Awards • All

Scholar to Mike Smith ★ 6.5k

Popular Question to mohammedtoufiq91 ▴ 10