Showing : gosim • reset
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GOSim yeast
GO Yeast GOSim GO Yeast GOSim
updated 8.1 years ago by • 0 • written 12.9 years ago by ★ 13k
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Query Gene Ontology
GOSim GOSim
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 10
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
updated 13.6 years ago by ▴ 40 • written 13.7 years ago by ★ 7.2k
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Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 8.1 years ago by ▴ 760 • written 9.6 years ago by ▴ 10
3
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compute similarities of GOTerms with GOSim in non-human species
GOSim
updated 6.5 years ago by ▴ 760 • written 6.5 years ago by ▴ 10
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Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 20
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GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 2.2 years ago by ▴ 760 • written 2.2 years ago by ▴ 10
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
13.7 years ago Olivier Lucas ▴ 40
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Problem while working with GOSim package
GOSim GOSim
12.7 years ago ANIRBAN BHAR ▴ 60
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GOSim Problem
Yeast Organism GOSim Yeast Organism GOSim
12.6 years ago Pablo Andretta Jaskowiak ▴ 10
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I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 2.6 years ago by ▴ 780 • written 2.6 years ago by • 0
11 results • Page 1 of 1
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Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
Comment: RNA Seq using Lrt by Rob • 0
So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…
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A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
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