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goslim
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0
votes
8
replies
1.7k
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GOslim missing GO term
GO.db
GOslim
23 months ago
amanda
• 0
3
votes
4
replies
2.9k
views
GSEABase - Map gene/transcript IDs to GOslims?
gseabase
go
gene ontology
goslim
5.7 years ago • updated 2.6 years ago
samwhite
▴ 20
7
votes
9
replies
5.2k
views
GSEABase - View/extract GO terms mapped to each GOslim
go
GSEABase
GOslim
gene ontology
5.7 years ago • updated 2.6 years ago
samwhite
▴ 20
0
votes
2
replies
2.1k
views
Resolved- GSEAbase: goSlim function, pb with counts
GSEA
GO
goSlim
8.1 years ago
maeva.mollion
• 0
1
vote
1
reply
1.7k
views
Obtaining Go slim terms from biomaRt
biomaRt
goslim
go
updated 8.9 years ago by
Mike Smith
★ 6.6k • written 8.9 years ago by
rubi
▴ 110
0
votes
0
replies
1.7k
views
Create list of genes within each GOslim term
gene ontology
goslim
enrichment analysis
gene annotation
9.5 years ago
mirko
• 0
6 results • Page
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
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teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Votes
DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
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