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gothic
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4
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20
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2.4k
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scaling loess curves
HiTC
gothic
diffhic
HiC
8.6 years ago
Bogdan
▴ 670
0
votes
3
replies
1.6k
views
GOTHiC hg19 error
GOTHiC
hic
8.6 years ago
Nathan Sheffield
▴ 10
0
votes
1
reply
3.7k
views
Error in FUN(X[[i]], ...) : subscript out of bounds
bioconductor
gothic
R
updated 8.9 years ago by
Vicky_Tche
• 0 • written 8.9 years ago by
sv380
• 0
0
votes
0
replies
797
views
GOTHiC odd output
gothic
7.9 years ago
manduchi
▴ 10
0
votes
3
replies
983
views
GOTHiC's GOTHiC's function fails with bwa input
GOTHiC
5.5 years ago
alongalor
▴ 10
0
votes
1
reply
902
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
5.4 years ago
mictadlo
▴ 10
0
votes
0
replies
1.1k
views
GOTHiC seqlevel bug
GOTHiC
software error
9.0 years ago
bef22
• 0
0
votes
9
replies
1.5k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
mictadlo
▴ 10
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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