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graphite
•
reset
0
votes
11
replies
2.5k
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"graphite" Biocarta 'native' graphs different from Biocarta web site?
Transcription
Pathways
Leukemia
graphite
Transcription
Pathways
Leukemia
graphite
11.9 years ago
Hamid Bolouri
▴ 90
5
votes
4
replies
1.8k
views
Reactome pathways in ReactomeDB/graphite
reactomepa
reactome
graphite
updated 7.3 years ago by
gabriele.sales
▴ 100 • written 7.3 years ago by
i.sudbery
▴ 40
0
votes
4
replies
1.4k
views
graphite and PoTRa
graphite
potra
6.1 years ago
genomic8328
▴ 10
1
vote
4
replies
1.5k
views
Indirect path in KEGG, activation or inhibition?
bioconductor
graphite
kegg
pathway analysis
updated 7.2 years ago by
gabriele.sales
▴ 100 • written 7.2 years ago by
haoran.chen
• 0
1
vote
3
replies
1.5k
views
graphite functions missing, installed version is out of date
graphite
bioclite
8.9 years ago
mhlinder
• 0
2
votes
3
replies
2.6k
views
Goseq analysis with Biocarta, Reactome, and NCI pathways?
goseq
graphite
9.2 years ago • updated 7.4 years ago
b.nota
▴ 360
0
votes
3
replies
1.9k
views
runSPIA() in graphite package
Pathways
Breast
siggenes
PROcess
cycle
graphite
Pathways
Breast
siggenes
PROcess
cycle
updated 11.2 years ago by
Enrica
▴ 20 • written 11.2 years ago by
array chip
▴ 420
0
votes
2
replies
1.1k
views
graphite package SSL certificate
graphite
2.4 years ago • updated 2.2 years ago
x
• 0
1
vote
2
replies
1.9k
views
Question on graphite/SPIA; extracting DE gene list
graphite
spia
runSPIA
updated 5.3 years ago by
Bioconductor Community
0 • written 9.1 years ago by
rgamini
• 0
1
vote
2
replies
1.6k
views
graphite KEGG pathway list vs KEGG pathway list
graphite
updated 9.1 years ago by
gabriele.sales
▴ 100 • written 9.1 years ago by
rgamini
• 0
1
vote
2
replies
1.4k
views
KEGG data error?
bioconductor
graphite
pathway analysis
updated 7.2 years ago by
gabriele.sales
▴ 100 • written 7.2 years ago by
haoran.chen
• 0
0
votes
2
replies
813
views
Direct interactions in graphite ?
graphite
interaction
updated 4.0 years ago by
gabriele.sales
▴ 100 • written 4.0 years ago by
emisecherre
• 0
0
votes
2
replies
1.3k
views
edge-less pathways in graphite
graphite
graphite
updated 12.0 years ago by
Paul Shannon
▴ 750 • written 12.0 years ago by
Hamid Bolouri
▴ 90
3
votes
2
replies
1.2k
views
Error installing graphite
graphite
updated 5.4 years ago by
gabriele.sales
▴ 100 • written 5.4 years ago by
Lluís Revilla Sancho
▴ 730
0
votes
1
reply
1.7k
views
pathway analysis by SPIA using SPIA package vs graphite package
Pathways
SPIA
cycle
graphite
Pathways
SPIA
cycle
graphite
10.3 years ago
array chip
▴ 420
0
votes
0
replies
1.2k
views
graphite biopax conversion code?
Pathways
graphite
Pathways
graphite
10.0 years ago
Ryan C. Thompson
★ 7.9k
16 results • Page
1 of 1
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Replies
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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