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gseGO
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2
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4.4k
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How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2
clusterprofiler
visualization
gseGo
7.1 years ago • updated 3.5 years ago
tcalvo
▴ 90
4
votes
15
replies
4.0k
views
All genes in a set for gseGO funtion
gseGO
setSize
updated 20 months ago by
James W. MacDonald
66k • written 20 months ago by
Adelyn
▴ 10
0
votes
1
reply
2.2k
views
clusterProlifer: plotGOgraph() error with gseGO() result
clusterprofiler
gseGO
plotGOgraph()
topGO
updated 7.2 years ago by
Guangchuang Yu
★ 1.2k • written 7.3 years ago by
cjsifuen
• 0
0
votes
1
reply
1.3k
views
Remove highly similar terms from a GO gene set enrichment analysis
clusterProfiler
gseGO
gene ontology
go semantic similarity
gene set enrichment analysis
6.0 years ago
jan.soderman
• 0
0
votes
1
reply
1.0k
views
How to change the siez of lables in heatmap
software error
go
dose
heatplot
gseGo
5.3 years ago
aboumarshal
• 0
0
votes
1
reply
901
views
How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO
GeneSet
clusterProfiler
GeneSetEnrichment
updated 10 months ago by
James W. MacDonald
66k • written 10 months ago by
manuelsokolov
• 0
2
votes
1
reply
252
views
Only positive enrichment score in GSEA
clusterProfiler
annotation
gseGO
gsea
OrgDb
updated 9 weeks ago by
Guido Hooiveld
★ 4.0k • written 9 weeks ago by
enee
▴ 10
7 results • Page
1 of 1
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Replies
Comment: GSVA function
by
Robert Castelo
★ 3.3k
No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …
Comment: conumee with Infinium MethylationEPIC v2.0
by
sgomez
• 0
Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840
Comment: Error in render R qmd document (could not find function "process")
by
ATpoint
★ 4.2k
This is not related to Bioconductor, and even if it was, please understand that without code one cannot debug these questions. The most obv…
Comment: GSVA function
by
michelafrancesconi8
• 0
When I log trasform my matrix after the DESeq2 normalization, I have some negative value, should I add a 1 to all my matrix? Thank you Mi…
Comment: Normalisation using clinical traits in RNA seq using DESeq2
by
sukeshinik5
• 0
Thank you, so much for the response. When we estimate factors of unwanted variable, which is the better options for factorisation of the va…
Votes
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
A: DiffBind Batch Effect
A: DiffBind Batch Effect
C: DiffBind Batch Effect
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Robert Castelo
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kevin.rue
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