Showing : hgug4112a • reset
3
votes
9
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3.1k
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Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
9.9 years ago Konstantinos Yeles ▴ 90
0
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0
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virtualArray package
Annotation Preprocessing hgu133plus2 hgug4112a
11.3 years ago Guest User ★ 13k
0
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0
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9.8k
views
virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray Annotation Preprocessing hgu133plus2 hgug4112a virtualArray Microarray hgug4112a
11.5 years ago Guest User ★ 13k
0
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1
reply
1.1k
views
hgug4845a.db - error in the lookUp function when running genes.rpt.agi
Annotation hgug4112a Annotation hgug4112a
updated 12.2 years ago by 68k • written 12.2 years ago by ▴ 10
0
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0
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1.5k
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Quantiles from virtualArray example without batcheffect removal are all the same
Microarray BatchEffect hgu133plus2 hgug4112a virtualArray Microarray BatchEffect hgug4112a
12.7 years ago Daniel Emden ▴ 10
0
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0
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1.3k
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Mapping genes to their gene sets for GSEA
Microarray Genetics GO hgu95av2 hgug4112a Microarray Genetics GO hgu95av2 hgug4112a
13.5 years ago Yoo, Seungyeul ▴ 110
0
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1
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1.0k
views
How to create annotation package for not a supported organism
Annotation GO Organism hgug4112a Annotation GO Organism hgug4112a
updated 14.3 years ago by ★ 6.8k • written 14.3 years ago by ▴ 90
0
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0
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1.2k
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FW: normalization one color microarrays
Normalization hgug4112a PROcess Agi4x44PreProcess Normalization hgug4112a PROcess
14.3 years ago Paz Tapia Ramirez ▴ 150
0
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1
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1.4k
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Agi4x44PreProcess: INPUT DATA DOES NOT CONTAIN - Sequence and chr_coord SCANN THE DATA USING AFE 9.5.3.1 Error in read.AgilentFE(targets, makePLOT = …
hgug4112a Agi4x44PreProcess hgug4112a Agi4x44PreProcess
updated 15.4 years ago by ▴ 460 • written 15.4 years ago by ▴ 20
0
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1
reply
1.1k
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Problem with createAnnObjs.HUMANCHIP_DB
hgug4112a RmiR hgug4112a RmiR
updated 15.6 years ago by 25k • written 15.6 years ago by ▴ 10
0
votes
2
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1.3k
views
Agilent annotation source
Annotation hgug4112a oligo Annotation hgug4112a oligo
updated 15.9 years ago by 68k • written 15.9 years ago by ★ 1.1k
0
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0
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1.1k
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Questions on the package "RmiR"
miRNA hgug4112a RmiR miRNA hgug4112a RmiR
15.9 years ago jason0701 ▴ 190
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0
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1.1k
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Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a probe limma Agi4x44PreProcess hgug4112a probe limma Agi4x44PreProcess
16.0 years ago Pedro Lopez-Romero ▴ 120
0
votes
0
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1.6k
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on the meaning and value of $stdev.unscaled in a limma's lmFitted MArrayLM object
GO hgug4112a probe GO hgug4112a probe
16.0 years ago Massimo Pinto ▴ 390
0
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0
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1.0k
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error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
Annotation hgug4112a Annotation hgug4112a
16.1 years ago Massimo Pinto ▴ 390
0
votes
3
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2.2k
views
error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
hgug4112a hgug4112a
updated 16.1 years ago by ★ 5.5k • written 16.1 years ago by ▴ 390
0
votes
11
replies
2.6k
views
Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a hgug4112a
updated 16.2 years ago by ★ 1.3k • written 16.2 years ago by ▴ 390
0
votes
2
replies
9.8k
views
an apparently strange case of 'Warning: number of items to replace is not a multiple of replacement length'
GO hgug4112a GO hgug4112a
updated 16.2 years ago by 68k • written 16.2 years ago by ▴ 390
0
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0
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1.1k
views
build.mappings() from Agi4x44PreProcess is not helping me today
GO GUI hgug4112a limma PROcess Agi4x44PreProcess GO GUI hgug4112a limma PROcess
16.4 years ago Massimo Pinto ▴ 390
0
votes
1
reply
1.5k
views
GOstats: HyperGTest for KEGG
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
updated 16.9 years ago by ★ 7.2k • written 16.9 years ago by ▴ 180
0
votes
0
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1.6k
views
GOstats: hyperGTest for KEGG with org.Sc.sgd.db
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
16.9 years ago Paul Evans ▴ 180
0
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2
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2.0k
views
Agilent G4112F with hgug4112a.db?
GO hgug4112a GO hgug4112a
updated 17.1 years ago by ★ 1.3k • written 17.1 years ago by ▴ 190
0
votes
1
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1.2k
views
Agilent spike-in probes
Annotation Normalization GO hgug4112a limma Annotation Normalization GO hgug4112a limma
updated 17.7 years ago by 21k • written 17.7 years ago by ▴ 600
0
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1
reply
1.2k
views
Agilent spike-in probes
Annotation Normalization GO hgug4112a limma Annotation Normalization GO hgug4112a limma
updated 17.7 years ago by ★ 6.0k • written 17.7 years ago by 21k
24 results • Page 1 of 1
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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0
For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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