Showing : hgug4112a • reset
3
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9
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Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
9.3 years ago Konstantinos Yeles ▴ 80
0
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0
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virtualArray package
Annotation Preprocessing hgu133plus2 hgug4112a
10.6 years ago Guest User ★ 13k
0
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0
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virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray Annotation Preprocessing hgu133plus2 hgug4112a virtualArray Microarray hgug4112a
10.9 years ago Guest User ★ 13k
0
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1
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hgug4845a.db - error in the lookUp function when running genes.rpt.agi
Annotation hgug4112a Annotation hgug4112a
updated 11.6 years ago by 68k • written 11.6 years ago by ▴ 10
0
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1.4k
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Quantiles from virtualArray example without batcheffect removal are all the same
Microarray BatchEffect hgu133plus2 hgug4112a virtualArray Microarray BatchEffect hgug4112a
12.0 years ago Daniel Emden ▴ 10
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Mapping genes to their gene sets for GSEA
Microarray Genetics GO hgu95av2 hgug4112a Microarray Genetics GO hgu95av2 hgug4112a
12.9 years ago Yoo, Seungyeul ▴ 110
0
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1
reply
964
views
How to create annotation package for not a supported organism
Annotation GO Organism hgug4112a Annotation GO Organism hgug4112a
updated 13.6 years ago by ★ 6.8k • written 13.6 years ago by ▴ 90
0
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FW: normalization one color microarrays
Normalization hgug4112a PROcess Agi4x44PreProcess Normalization hgug4112a PROcess
13.7 years ago Paz Tapia Ramirez ▴ 150
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1
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1.3k
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Agi4x44PreProcess: INPUT DATA DOES NOT CONTAIN - Sequence and chr_coord SCANN THE DATA USING AFE 9.5.3.1 Error in read.AgilentFE(targets, makePLOT = …
hgug4112a Agi4x44PreProcess hgug4112a Agi4x44PreProcess
updated 14.8 years ago by ▴ 460 • written 14.8 years ago by ▴ 20
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1
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1.0k
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Problem with createAnnObjs.HUMANCHIP_DB
hgug4112a RmiR hgug4112a RmiR
updated 14.9 years ago by 25k • written 14.9 years ago by ▴ 10
0
votes
2
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1.2k
views
Agilent annotation source
Annotation hgug4112a oligo Annotation hgug4112a oligo
updated 15.2 years ago by 68k • written 15.2 years ago by ★ 1.1k
0
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0
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Questions on the package "RmiR"
miRNA hgug4112a RmiR miRNA hgug4112a RmiR
15.2 years ago jason0701 ▴ 190
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Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a probe limma Agi4x44PreProcess hgug4112a probe limma Agi4x44PreProcess
15.4 years ago Pedro Lopez-Romero ▴ 120
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0
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on the meaning and value of $stdev.unscaled in a limma's lmFitted MArrayLM object
GO hgug4112a probe GO hgug4112a probe
15.4 years ago Massimo Pinto ▴ 390
0
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0
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979
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error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
Annotation hgug4112a Annotation hgug4112a
15.5 years ago Massimo Pinto ▴ 390
0
votes
3
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2.1k
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error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
hgug4112a hgug4112a
updated 15.5 years ago by ★ 5.5k • written 15.5 years ago by ▴ 390
0
votes
11
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2.3k
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Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a hgug4112a
updated 15.5 years ago by ★ 1.3k • written 15.5 years ago by ▴ 390
0
votes
2
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9.6k
views
an apparently strange case of 'Warning: number of items to replace is not a multiple of replacement length'
GO hgug4112a GO hgug4112a
updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 390
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0
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1.0k
views
build.mappings() from Agi4x44PreProcess is not helping me today
GO GUI hgug4112a limma PROcess Agi4x44PreProcess GO GUI hgug4112a limma PROcess
15.8 years ago Massimo Pinto ▴ 390
0
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1
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1.4k
views
GOstats: HyperGTest for KEGG
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
updated 16.2 years ago by ★ 7.2k • written 16.2 years ago by ▴ 180
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0
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GOstats: hyperGTest for KEGG with org.Sc.sgd.db
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
16.3 years ago Paul Evans ▴ 180
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2
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1.9k
views
Agilent G4112F with hgug4112a.db?
GO hgug4112a GO hgug4112a
updated 16.5 years ago by ★ 1.3k • written 16.5 years ago by ▴ 190
0
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1
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1.1k
views
Agilent spike-in probes
Annotation Normalization GO hgug4112a limma Annotation Normalization GO hgug4112a limma
updated 17.1 years ago by 21k • written 17.1 years ago by ▴ 600
0
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1
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1.1k
views
Agilent spike-in probes
Annotation Normalization GO hgug4112a limma Annotation Normalization GO hgug4112a limma
updated 17.1 years ago by ★ 6.0k • written 17.1 years ago by 21k
24 results • Page 1 of 1
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Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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