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hicdcplus
•
reset
0
votes
0
replies
98
views
HiCDCPlus differential interaction error
HiCDCPlus
7 weeks ago
Irene
• 0
0
votes
2
replies
242
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 3 months ago by
IsMM
• 0
0
votes
1
reply
410
views
HiCDCPlus glm.fit error
HiCDCPlus
updated 9 months ago by
merve.sahn
• 0 • written 10 months ago by
ehamrud
• 0
0
votes
1
reply
358
views
HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
HiCDCPlus
updated 9 months ago by
merve.sahn
• 0 • written 12 months ago by
mlin18
• 0
0
votes
1
reply
723
views
Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus
BSgenome.Hsapiens.UCSC.hg38
updated 9 months ago by
merve.sahn
• 0 • written 15 months ago by
Yue
• 0
0
votes
1
reply
430
views
HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+
HiCDCPlus
updated 9 months ago by
merve.sahn
• 0 • written 16 months ago by
Yue
• 0
0
votes
2
replies
619
views
Could I use HiCDCPlus in plant genome?
HiC-DC+
HiCDCPlus
updated 20 months ago by
scott
• 0 • written 2.0 years ago by
1037144675
• 0
0
votes
1
reply
725
views
HiCDCPlus with NO replicates
hicdcdiff
HiCDCPlus
updated 23 months ago by
merve.sahn
• 0 • written 2.2 years ago by
ta_awwad
▴ 10
0
votes
2
replies
1.0k
views
HicDCplus error, R_Reprotect: only 4 protected items, can't reprotect index -1 (from gi_list_write)
hicd
HiCDCPlus
updated 12 months ago by
Michelle
• 0 • written 2.3 years ago by
franceschini.gianmarco
• 0
0
votes
1
reply
602
views
HiC-DC+ Distance / Model Fitting error when running HiCDCPlus()
HiC-DC+
HiCDCPlus
updated 23 months ago by
merve.sahn
• 0 • written 2.6 years ago by
Hannah
• 0
3
votes
7
replies
2.1k
views
Which version of R to use for "HiCDCPlus" "HiC-DC+"
HiC-DC+
HiCDCPlus
BiocParallel
updated 3.1 years ago by
koushik
• 0 • written 3.4 years ago by
Tay
▴ 10
0
votes
3
replies
812
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 23 months ago by
merve.sahn
• 0 • written 3.4 years ago by
mtS
• 0
12 results • Page
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Replies
Comment: error when using M-values in ChAMP
by
hortenseguillaume96
• 0
Hello Tian, I'd like to get the M-values matrix so that I can carry out a linear regression study. However, when I apply the champ.load fu…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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