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hicdcplus
•
reset
0
votes
0
replies
427
views
HiCDCPlus differential interaction error
HiCDCPlus
20 months ago
Irene
• 0
0
votes
2
replies
740
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 22 months ago by
IsMM
• 0
0
votes
1
reply
811
views
HiCDCPlus glm.fit error
HiCDCPlus
updated 2.3 years ago by
merve.sahn
• 0 • written 2.4 years ago by
ehamrud
• 0
0
votes
1
reply
744
views
HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
HiCDCPlus
updated 2.3 years ago by
merve.sahn
• 0 • written 2.5 years ago by
mlin18
• 0
0
votes
1
reply
1.4k
views
Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus
BSgenome.Hsapiens.UCSC.hg38
updated 2.3 years ago by
merve.sahn
• 0 • written 2.8 years ago by
Yue
• 0
0
votes
1
reply
803
views
HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+
HiCDCPlus
updated 2.3 years ago by
merve.sahn
• 0 • written 2.9 years ago by
Yue
• 0
0
votes
2
replies
1.1k
views
Could I use HiCDCPlus in plant genome?
HiC-DC+
HiCDCPlus
updated 3.2 years ago by
scott
• 0 • written 3.6 years ago by
1037144675
• 0
0
votes
1
reply
1.1k
views
HiCDCPlus with NO replicates
hicdcdiff
HiCDCPlus
updated 3.4 years ago by
merve.sahn
• 0 • written 3.7 years ago by
ta_awwad
▴ 10
0
votes
2
replies
1.7k
views
HicDCplus error, R_Reprotect: only 4 protected items, can't reprotect index -1 (from gi_list_write)
hicd
HiCDCPlus
updated 2.6 years ago by
Michelle
• 0 • written 3.8 years ago by
gamma.jian
▴ 10
0
votes
1
reply
984
views
HiC-DC+ Distance / Model Fitting error when running HiCDCPlus()
HiC-DC+
HiCDCPlus
updated 3.4 years ago by
merve.sahn
• 0 • written 4.2 years ago by
Hannah
• 0
3
votes
7
replies
2.9k
views
Which version of R to use for "HiCDCPlus" "HiC-DC+"
HiC-DC+
HiCDCPlus
BiocParallel
updated 4.6 years ago by
koushik
• 0 • written 4.9 years ago by
Tay
▴ 10
0
votes
3
replies
1.2k
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 3.4 years ago by
merve.sahn
• 0 • written 4.9 years ago by
mtS
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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