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hicdcplus
•
reset
0
votes
0
replies
434
views
HiCDCPlus differential interaction error
HiCDCPlus
21 months ago
Irene
• 0
0
votes
2
replies
757
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 23 months ago by
IsMM
• 0
0
votes
1
reply
822
views
HiCDCPlus glm.fit error
HiCDCPlus
updated 2.4 years ago by
merve.sahn
• 0 • written 2.4 years ago by
ehamrud
• 0
0
votes
1
reply
754
views
HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
HiCDCPlus
updated 2.4 years ago by
merve.sahn
• 0 • written 2.6 years ago by
mlin18
• 0
0
votes
1
reply
1.4k
views
Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus
BSgenome.Hsapiens.UCSC.hg38
updated 2.4 years ago by
merve.sahn
• 0 • written 2.9 years ago by
Yue
• 0
0
votes
1
reply
813
views
HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+
HiCDCPlus
updated 2.4 years ago by
merve.sahn
• 0 • written 2.9 years ago by
Yue
• 0
0
votes
2
replies
1.1k
views
Could I use HiCDCPlus in plant genome?
HiC-DC+
HiCDCPlus
updated 3.2 years ago by
scott
• 0 • written 3.6 years ago by
1037144675
• 0
0
votes
1
reply
1.1k
views
HiCDCPlus with NO replicates
hicdcdiff
HiCDCPlus
updated 3.5 years ago by
merve.sahn
• 0 • written 3.8 years ago by
ta_awwad
▴ 10
0
votes
2
replies
1.7k
views
HicDCplus error, R_Reprotect: only 4 protected items, can't reprotect index -1 (from gi_list_write)
hicd
HiCDCPlus
updated 2.6 years ago by
Michelle
• 0 • written 3.9 years ago by
gamma.jian
▴ 10
0
votes
1
reply
998
views
HiC-DC+ Distance / Model Fitting error when running HiCDCPlus()
HiC-DC+
HiCDCPlus
updated 3.5 years ago by
merve.sahn
• 0 • written 4.2 years ago by
Hannah
• 0
3
votes
7
replies
3.0k
views
Which version of R to use for "HiCDCPlus" "HiC-DC+"
HiC-DC+
HiCDCPlus
BiocParallel
updated 4.7 years ago by
koushik
• 0 • written 5.0 years ago by
Tay
▴ 10
0
votes
3
replies
1.3k
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 3.5 years ago by
merve.sahn
• 0 • written 5.0 years ago by
mtS
• 0
12 results • Page
1 of 1
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Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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