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hisat2
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1
vote
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1.1k
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HISAT2 mapping
hisat2
results
updated 2.6 years ago by
ATpoint
★ 5.0k • written 2.6 years ago by
ali
• 0
0
votes
0
replies
2.0k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform
RNA-seq
hisat2
stringtie
ballgown
5.1 years ago
ra711
• 0
0
votes
0
replies
2.3k
views
RNA-seq with hisat2+stringtie+ballgown
hisat2
stringtie
ballgown
RNAseq
7.8 years ago • updated 7.5 years ago
Nancy
▴ 10
1
vote
1
reply
1.9k
views
RNA-seq for DGE
stringtie
illumina
hisat2
ballgown
updated 8.0 years ago by
k.vitting.seerup
▴ 120 • written 8.0 years ago by
amy16
• 0
0
votes
1
reply
1.5k
views
Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
transcription
hisat2
8.0 years ago
zoukai3412085
• 0
4
votes
5
replies
6.9k
views
Hisat2 vs featureCounts summary statistics
featurecounts
hisat2
rna-seq
mapping
updated 9.5 years ago by
Wei Shi
★ 3.6k • written 9.5 years ago by
Koen Van den Berge
▴ 180
6 results • Page
1 of 1
Recent ...
Replies
Comment: After running samtools, the featureCounts command crashed.
by
surprised.swordtail.tlfy
• 0
Hey Rui, that's a tricky error! Kevin's suggestion about the GTF file makes total sense. I've had similar issues with file paths in WSL cau…
Comment: How to reverse complement some elements of a DNAStringSet
by
Lenson
• 0
Hey, thanks for the insightful post! I totally get what you mean about the learning process. Sometimes you try a new approach and it just d…
Comment: Research and Service Group Leader positions in AI in Biology at EMBL
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eja.gssssswssswwse.r.m
• 0
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
by
Matthew Thornton
▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated
by
RalphSavage99
• 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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