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hisat2
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HISAT2 mapping
hisat2
results
updated 2.1 years ago by
ATpoint
★ 4.8k • written 2.1 years ago by
ali
• 0
0
votes
0
replies
1.8k
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HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform
RNA-seq
hisat2
stringtie
ballgown
4.6 years ago
ra711
• 0
0
votes
0
replies
2.2k
views
RNA-seq with hisat2+stringtie+ballgown
hisat2
stringtie
ballgown
RNAseq
7.2 years ago • updated 7.0 years ago
Nancy
▴ 10
1
vote
1
reply
1.7k
views
RNA-seq for DGE
stringtie
illumina
hisat2
ballgown
updated 7.4 years ago by
k.vitting.seerup
▴ 120 • written 7.4 years ago by
amy16
• 0
0
votes
1
reply
1.4k
views
Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
transcription
hisat2
7.4 years ago
zoukai3412085
• 0
4
votes
5
replies
6.7k
views
Hisat2 vs featureCounts summary statistics
featurecounts
hisat2
rna-seq
mapping
updated 8.9 years ago by
Wei Shi
★ 3.6k • written 9.0 years ago by
Koen Van den Berge
▴ 180
6 results • Page
1 of 1
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Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
donnycrimson
• 0
Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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