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hisat2
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1.2k
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HISAT2 mapping
hisat2
results
updated 2.8 years ago by
ATpoint
★ 5.0k • written 2.8 years ago by
ali
• 0
0
votes
0
replies
2.1k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform
RNA-seq
hisat2
stringtie
ballgown
5.3 years ago
ra711
• 0
0
votes
0
replies
2.4k
views
RNA-seq with hisat2+stringtie+ballgown
hisat2
stringtie
ballgown
RNAseq
7.9 years ago • updated 7.7 years ago
Nancy
▴ 10
1
vote
1
reply
1.9k
views
RNA-seq for DGE
stringtie
illumina
hisat2
ballgown
updated 8.2 years ago by
k.vitting.seerup
▴ 120 • written 8.2 years ago by
amy16
• 0
0
votes
1
reply
1.6k
views
Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
transcription
hisat2
8.2 years ago
zoukai3412085
• 0
4
votes
5
replies
7.1k
views
Hisat2 vs featureCounts summary statistics
featurecounts
hisat2
rna-seq
mapping
updated 9.7 years ago by
Wei Shi
★ 3.6k • written 9.7 years ago by
Koen Van den Berge
▴ 180
6 results • Page
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
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• 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice
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Gordon Smyth
53k
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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