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hisat2
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reset
1
vote
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1.1k
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HISAT2 mapping
hisat2
results
updated 2.6 years ago by
ATpoint
★ 5.0k • written 2.6 years ago by
ali
• 0
0
votes
0
replies
2.0k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform
RNA-seq
hisat2
stringtie
ballgown
5.1 years ago
ra711
• 0
0
votes
0
replies
2.3k
views
RNA-seq with hisat2+stringtie+ballgown
hisat2
stringtie
ballgown
RNAseq
7.7 years ago • updated 7.5 years ago
Nancy
▴ 10
1
vote
1
reply
1.9k
views
RNA-seq for DGE
stringtie
illumina
hisat2
ballgown
updated 8.0 years ago by
k.vitting.seerup
▴ 120 • written 8.0 years ago by
amy16
• 0
0
votes
1
reply
1.5k
views
Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
transcription
hisat2
8.0 years ago
zoukai3412085
• 0
4
votes
5
replies
6.9k
views
Hisat2 vs featureCounts summary statistics
featurecounts
hisat2
rna-seq
mapping
updated 9.5 years ago by
Wei Shi
★ 3.6k • written 9.5 years ago by
Koen Van den Berge
▴ 180
6 results • Page
1 of 1
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Comment: Highly DE genes but small count difference within conditions
by
shy.hippopotamus.yxmb
• 0
Monkey Mart: The Ultimate Gaming Marketplace Experience https://monkeymart.one/
Comment: Highly DE genes but small count difference within conditions
by
shy.hippopotamus.yxmb
• 0
Enter the world of Monkey Mart, where gaming meets innovation. We've created a cutting-edge marketplace that's transforming how gamers trad…
Comment: Highly DE genes but small count difference within conditions
by
shy.hippopotamus.yxmb
• 0
Enter the world of , where gaming meets innovation. We've created a cutting-edge marketplace that's transforming how gamers trade and conne…
Comment: copy number/LOH for Affy 100K
by
igkryycpinmshzugby
• 0
Hi John For copy number and LOH analysis from Affymetrix 100K SNP arrays you can use aroma.affymetrix or CRLMM packages in Bioconductor. …
Comment: Integration: Paired-end vs healthy single-end from a different source
by
igkryycpinmshzugby
• 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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