Showing : hisat2 • reset
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HISAT2 mapping
hisat2 results
updated 21 months ago by ★ 4.6k • written 21 months ago by • 0
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HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform RNA-seq hisat2 stringtie ballgown
4.2 years ago ra711 • 0
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2.1k
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RNA-seq with hisat2+stringtie+ballgown
hisat2 stringtie ballgown RNAseq
6.9 years ago • updated 6.6 years ago Nancy ▴ 10
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1.6k
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RNA-seq for DGE
stringtie illumina hisat2 ballgown
updated 7.1 years ago by ▴ 120 • written 7.1 years ago by • 0
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1.3k
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Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
transcription hisat2
7.1 years ago zoukai3412085 • 0
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Hisat2 vs featureCounts summary statistics
featurecounts hisat2 rna-seq mapping
updated 8.6 years ago by ★ 3.6k • written 8.6 years ago by ▴ 180
6 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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Scholar to James W. MacDonald 67k
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