Bioconductor Hisat2

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hisat2 results

updated 20 months ago by ATpoint ★ 4.5k • written 20 months ago by ali • 0

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isoform RNA-seq hisat2 stringtie ballgown

4.1 years ago ra711 • 0

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2.1k

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hisat2 stringtie ballgown RNAseq

6.8 years ago • updated 6.5 years ago Nancy ▴ 10

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1.6k

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stringtie illumina hisat2 ballgown

updated 7.0 years ago by k.vitting.seerup ▴ 120 • written 7.0 years ago by amy16 • 0

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1.2k

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transcription hisat2

7.0 years ago zoukai3412085 • 0

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6.4k

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featurecounts hisat2 rna-seq mapping

updated 8.5 years ago by Wei Shi ★ 3.6k • written 8.6 years ago by Koen Van den Berge ▴ 180

6 results • Page 1 of 1

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Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0

You are an absolute lifesaver, thank you so much for the clarification!

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

The `EnsDb.Mmusculus.v79` package is mm38, not mm39. If you want a current `EnsDb`, use `AnnotationHub` ``` > library(AnnotationHub) >…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…

Comment: ANOVA like approach of edgeR by Yunshun Chen ▴ 880

If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …

Comment: ANOVA like approach of edgeR by SamGG ▴ 350

Simply remove the cell type from the model. design <- model.matrix(~targets$Status)

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Answer: ANOVA like approach of edgeR

A: ANOVA-like test with edgeR

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

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