Bioconductor Hisat2

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hisat2 results

updated 2.8 years ago by ATpoint ★ 5.0k • written 2.8 years ago by ali • 0

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2.1k

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isoform RNA-seq hisat2 stringtie ballgown

5.3 years ago ra711 • 0

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2.4k

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hisat2 stringtie ballgown RNAseq

7.9 years ago • updated 7.7 years ago Nancy ▴ 10

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1.9k

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stringtie illumina hisat2 ballgown

updated 8.2 years ago by k.vitting.seerup ▴ 120 • written 8.2 years ago by amy16 • 0

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1.6k

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transcription hisat2

8.2 years ago zoukai3412085 • 0

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7.1k

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featurecounts hisat2 rna-seq mapping

updated 9.7 years ago by Wei Shi ★ 3.6k • written 9.7 years ago by Koen Van den Berge ▴ 180

6 results • Page 1 of 1

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Comment: limpa analysis advice by Gordon Smyth 53k

Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …

Comment: limpa analysis advice by SamGG ▴ 360

Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…

Comment: Pairwise comparison of multiple groups with different base by ja569116 • 0

Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…

Comment: Are individual-mouse-based statistics possible in CellChat? by TikTsossakaas33ocissalpc • 0

Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…

Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

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Comment: limpa analysis advice

Answer: When to use edgeR or limma

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