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hitc
•
reset
0
votes
3
replies
898
views
HiTC import is throwing error
HiTC
importC
sparseMatrix
23 months ago
shikha
• 0
0
votes
6
replies
912
views
HiTC problem exporting to my5C
HiTC
HiC-Pro
4.2 years ago
sergio.espeso-gil
• 0
1
vote
3
replies
1.3k
views
A/B compartments computation: control settings
HiTC
updated 2.8 years ago by
ahmed.abbaselmahdi
• 0 • written 4.8 years ago by
Konstantin Okonechnikov
▴ 40
1
vote
5
replies
1.4k
views
visualize Hi-C .cool file in R
Hi-C
HiTC
5.8 years ago
ta_awwad
▴ 10
0
votes
2
replies
1.1k
views
Gene Density computation in pca.hic
HiTC
5.9 years ago
cath
▴ 30
0
votes
5
replies
1.6k
views
HiTC importC not working
HiTC
IRanges
windows
debian
updated 6.2 years ago by
Nicolas Servant
▴ 260 • written 6.2 years ago by
René Wiegandt
• 0
3
votes
5
replies
1.4k
views
normLGF yields non-symetric matrices
HiTC
updated 7.1 years ago by
Nicolas Servant
▴ 260 • written 7.1 years ago by
enrique.vidal
▴ 10
1
vote
10
replies
2.2k
views
FourC object from scratch
hi-c
HiTC
fourcseq
8.6 years ago • updated 8.4 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
1.2k
views
FourC object from scratch
hic-c
hitc
fourcseq
8.6 years ago
Nicolas Servant
▴ 260
4
votes
20
replies
2.4k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
8.7 years ago • updated 8.6 years ago
Bogdan
▴ 670
0
votes
0
replies
868
views
normalization method for 5C
HiTC
8.7 years ago
Bogdan
▴ 670
0
votes
0
replies
1.1k
views
Problem importing 5C data
importing
HiTC
9.1 years ago
gugpuccio
▴ 10
0
votes
1
reply
2.6k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 11.1 years ago by
Dan Tenenbaum
★ 8.2k • written 11.1 years ago by
Wim Kreinen
▴ 100
0
votes
4
replies
1.3k
views
genome_intervals and GRange objects/HiTC package
Annotation
HiTC
Annotation
HiTC
updated 11.2 years ago by
Valerie Obenchain
★ 6.8k • written 11.2 years ago by
Hermann Norpois
▴ 170
0
votes
1
reply
1.2k
views
HiTC: problem with HTClist
HiTC
HiTC
updated 11.2 years ago by
Martin Morgan
25k • written 11.2 years ago by
Hermann Norpois
▴ 170
15 results • Page
1 of 1
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Replies
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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