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homer
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1.3k
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HOMER error: Where is the file?
HOMER
chip-seq
updated 18 months ago by
ATpoint
★ 4.1k • written 18 months ago by
兆豪
• 0
0
votes
0
replies
827
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
2.5 years ago
Ankit
▴ 20
0
votes
1
reply
1.1k
views
Identification of Overrepresented Transcription Factor Binding Motifs in the Promoters of a List of DE Genes
HOMER
Motif Analysis
updated 6.4 years ago by
Ou, Jianhong
★ 1.3k • written 6.4 years ago by
JMallory
• 0
1
vote
3
replies
2.2k
views
Using HOMER called peaks in DiffBind
diffbind
HOMER
6.4 years ago
Hesh
▴ 10
0
votes
1
reply
1.9k
views
Homer getDiffExpression.pl issue
homer
atac-seq
updated 6.8 years ago by
Maciej Jończyk
• 0 • written 6.9 years ago by
niu.shengyong
• 0
3
votes
2
replies
2.4k
views
Best way to get HiCUP-mapped Hi-C data into diffHiC
hicup
hi-c
diffhic
homer
6.9 years ago • updated 6.8 years ago
e.jacobson
▴ 10
0
votes
1
reply
1.9k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 7.7 years ago by
Ou, Jianhong
★ 1.3k • written 7.7 years ago by
sarah.blackstone7734
• 0
7 results • Page
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Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Guido Hooiveld
★ 4.0k
FWIW: based on [previous posts][1] it is suggested to install like this: install.packages(pkgs="./org.Vdahliae.eg.db", repos=NULL, typ…
Votes
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
Answer: SGSeq: moving toward diffex from SGSeq analysis
Answer: How to design DEXSeq formula for multiple variables
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