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homer
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1.3k
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HOMER error: Where is the file?
HOMER
chip-seq
updated 18 months ago by
ATpoint
★ 4.1k • written 18 months ago by
兆豪
• 0
0
votes
0
replies
820
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
2.5 years ago
Ankit
▴ 20
0
votes
1
reply
1.1k
views
Identification of Overrepresented Transcription Factor Binding Motifs in the Promoters of a List of DE Genes
HOMER
Motif Analysis
updated 6.3 years ago by
Ou, Jianhong
★ 1.3k • written 6.3 years ago by
JMallory
• 0
1
vote
3
replies
2.2k
views
Using HOMER called peaks in DiffBind
diffbind
HOMER
6.4 years ago
Hesh
▴ 10
0
votes
1
reply
1.9k
views
Homer getDiffExpression.pl issue
homer
atac-seq
updated 6.8 years ago by
Maciej Jończyk
• 0 • written 6.8 years ago by
niu.shengyong
• 0
3
votes
2
replies
2.4k
views
Best way to get HiCUP-mapped Hi-C data into diffHiC
hicup
hi-c
diffhic
homer
6.9 years ago • updated 6.8 years ago
e.jacobson
▴ 10
0
votes
1
reply
1.9k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 7.7 years ago by
Ou, Jianhong
★ 1.3k • written 7.7 years ago by
sarah.blackstone7734
• 0
7 results • Page
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Comment: SingleR Label.Ont
by
maaxxrellaax
• 0
nice post nice post nice post nice post nice post
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
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Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Comment: deseq2 results
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