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homer
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3
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Best way to get HiCUP-mapped Hi-C data into diffHiC
hicup
hi-c
diffhic
homer
6.9 years ago • updated 6.8 years ago
e.jacobson
▴ 10
1
vote
3
replies
2.2k
views
Using HOMER called peaks in DiffBind
diffbind
HOMER
6.4 years ago
Hesh
▴ 10
0
votes
1
reply
1.9k
views
Homer getDiffExpression.pl issue
homer
atac-seq
updated 6.8 years ago by
Maciej Jończyk
• 0 • written 6.8 years ago by
niu.shengyong
• 0
0
votes
1
reply
1.9k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 7.7 years ago by
Ou, Jianhong
★ 1.3k • written 7.7 years ago by
sarah.blackstone7734
• 0
0
votes
2
replies
1.3k
views
HOMER error: Where is the file?
HOMER
chip-seq
updated 18 months ago by
ATpoint
★ 4.1k • written 18 months ago by
兆豪
• 0
0
votes
1
reply
1.1k
views
Identification of Overrepresented Transcription Factor Binding Motifs in the Promoters of a List of DE Genes
HOMER
Motif Analysis
updated 6.3 years ago by
Ou, Jianhong
★ 1.3k • written 6.3 years ago by
JMallory
• 0
0
votes
0
replies
819
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
2.5 years ago
Ankit
▴ 20
7 results • Page
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Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Comment: Log-cpm values from limma
by
Gordon Smyth
50k
No, it does not mean that. `voom()` uses the design matrix, including the W covariates, to compute precision weights but not to adjust the …
Comment: Extremely small p-values using Limma for proteomic data
by
Abbey
• 0
This is the code. The only part I changed was adding the contrasts.fit as you suggested. Thanks for taking a look! ``` # Load necessary …
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
Probably. I would not expect such large fold changes. But without seeing your code, who knows?
Votes
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
Bioconductor 3.19 is Released!
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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