Bioconductor Illuminahumanmethylation450kanno.ilmn12.hg19

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illuminahumanmethylation450kanno.ilmn12.hg19 minfi illuminahumanmethylation450k.db methylation

updated 24 months ago by Will • 0 • written 8.5 years ago by metamaden ▴ 10

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IlluminaHumanMethylation450kanno.ilmn12.hg19

3.3 years ago whirlsyu • 0

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IlluminaHumanMethylation450kanno.ilmn12.hg19 R

updated 4.6 years ago by James W. MacDonald 65k • written 4.6 years ago by nipabasak • 0

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minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19

updated 7.1 years ago by Tim Peters ▴ 170 • written 7.1 years ago by poojitha.stemcell ▴ 10

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FDb.InfiniumMethylation.hg19 IlluminaHumanMethylation450kanno.ilmn12.hg19

7.7 years ago CPR ▴ 30

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minfi illuminahumanmethylation450kanno.ilmn12.hg19 illuminahumanmethylation450k.db

updated 8.7 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.7 years ago by AST ▴ 60

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

9.0 years ago alejandretheodore • 0

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IlluminaHumanMethylation450kanno.ilmn12.hg19

9.1 years ago richa.gupta • 0

8 results • Page 1 of 1

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Answer: rlog transformation by Michael Love 41k

It is dependent on the other samples in the dataset.

Answer: ONT long-read RNA sequencing - data analysis options by Michael Love 41k

*"This worked really well for brain but has not work as well for lung as I get #N/A for many padj"* See the vignette for the cause of th…

Answer: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by Michael Love 41k

Starting from the very top, do you understand the error? You need to provide sample info that matches 1-to-1 the columns of the counts matr…

Answer: covariate with negative and positive values by Michael Love 41k

Not a problem. However, if the values are very large (eg 1e6) or very small (eg 1e-6), it's a good idea to center and scale the variable…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Usually I run `voomLmFit`, although in order to create the mean-variance trend plots for this particular post, I ran `voom`; I've checked -…

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Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

Comment: Reading huge bismark coverage files using bbseq::read.bismark

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Popular Question to Alejandro Reyes ★ 1.9k