Bioconductor Interaction term

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deseq2 multifactor interaction term gender effect 3-factors

updated 5.5 years ago by Michael Love 42k • written 5.5 years ago by kmu004 ▴ 50

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deseq2 interaction term

6.1 years ago guipagui • 0

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deseq2 interaction term

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by Cece • 0

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deseq2 extracting contrasts rnaseq interaction term

updated 6.3 years ago by swbarnes2 ★ 1.4k • written 6.4 years ago by Amit Indap ▴ 10

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deseq2 lfcshrink interaction term

updated 6.5 years ago by Michael Love 42k • written 6.5 years ago by krutherford • 0

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deseq2 interaction term multiple groups betaprior

updated 6.5 years ago by Michael Love 42k • written 6.5 years ago by tarun2 • 0

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deseq2 multiple factor design interaction term

updated 6.7 years ago by Michael Love 42k • written 6.7 years ago by Giovanni Bacci • 0

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deseq2 design interaction term R

6.7 years ago briverog • 0

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deseq2 ANOVA design interaction term

updated 6.7 years ago by Michael Love 42k • written 6.7 years ago by tarun2 • 0

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deseq2 sva interaction term grouping variable deseq

6.8 years ago kevin.kingsland ▴ 70

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deseq2 interaction term

updated 7.2 years ago by Michael Love 42k • written 7.2 years ago by sofiagreen72211 ▴ 10

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deseq2 multiple factor design nested design interaction term

updated 7.5 years ago by Michael Love 42k • written 7.5 years ago by zahra.aboukhalil • 0

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deseq2 deseq limma interaction term

updated 7.5 years ago by Simon Anders ★ 3.8k • written 7.5 years ago by sbcn ▴ 80

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Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi again, Thank you for the response! Can you expound on why it is not a good idea? I realize that the expression levels/differential expr…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

No, that's not a good idea at all. You should be doing a meta-analysis with these data rather than trying to combine like that. `GeneMeta` …

Answer: GOstats kegg analysis in wheat - help - none of the objects in the first column by James W. MacDonald 67k

Check the help page for `KEGGFrame`. Your columns are out of order.

Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You are testing the interaction, so you are asking for those genes that change at any time *differently, depending on the treatment*. If co…

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you both. Special thanks from Prof. Michael Love. It's rare to find tool authors who respond to users so quickly and supportively. Ma…

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Comment: DESeq Input from Salmon + tximport/tximeta

Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

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Popular Question to Assa Yeroslaviz ★ 1.5k