Bioconductor Interaction term

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deseq2 extracting contrasts rnaseq interaction term

updated 5.8 years ago by swbarnes2 ★ 1.3k • written 5.9 years ago by Amit Indap ▴ 10

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deseq2 multiple factor design nested design interaction term

updated 7.0 years ago by Michael Love 41k • written 7.0 years ago by zahra.aboukhalil • 0

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deseq2 interaction term

updated 6.7 years ago by Michael Love 41k • written 6.7 years ago by sofiagreen72211 ▴ 10

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deseq2 sva interaction term grouping variable deseq

6.3 years ago kevin.kingsland ▴ 70

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deseq2 ANOVA design interaction term

updated 6.2 years ago by Michael Love 41k • written 6.2 years ago by tarun2 • 0

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deseq2 design interaction term R

6.2 years ago briverog • 0

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deseq2 multiple factor design interaction term

updated 6.2 years ago by Michael Love 41k • written 6.2 years ago by Giovanni Bacci • 0

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deseq2 interaction term multiple groups betaprior

updated 6.0 years ago by Michael Love 41k • written 6.0 years ago by tarun2 • 0

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deseq2 lfcshrink interaction term

updated 6.0 years ago by Michael Love 41k • written 6.0 years ago by krutherford • 0

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deseq2 interaction term

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by Cece • 0

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deseq2 interaction term

5.6 years ago guipagui • 0

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deseq2 deseq limma interaction term

updated 7.0 years ago by Simon Anders ★ 3.7k • written 7.0 years ago by sbcn ▴ 80

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deseq2 multifactor interaction term gender effect 3-factors

updated 5.0 years ago by Michael Love 41k • written 5.0 years ago by kmu004 ▴ 50

13 results • Page 1 of 1

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 with no issues at all. If you're having trouble with Bioc installa…

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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