Biostar Interaction term

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deseq2 multifactor interaction term gender effect 3-factors

updated 3.1 years ago by Michael Love 37k • written 3.1 years ago by kmu004 ▴ 40

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deseq2 interaction term

3.7 years ago guipagui • 0

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deseq2 interaction term

updated 3.7 years ago by Michael Love 37k • written 3.7 years ago by Cece • 0

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deseq2 extracting contrasts rnaseq interaction term

updated 3.9 years ago by swbarnes2 ★ 1.0k • written 3.9 years ago by Amit Indap ▴ 10

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927

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deseq2 lfcshrink interaction term

updated 4.0 years ago by Michael Love 37k • written 4.0 years ago by krutherford • 0

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553

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deseq2 interaction term multiple groups betaprior

updated 4.1 years ago by Michael Love 37k • written 4.1 years ago by tarun2 • 0

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deseq2 multiple factor design interaction term

updated 4.2 years ago by Michael Love 37k • written 4.2 years ago by Giovanni Bacci • 0

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678

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deseq2 design interaction term R

4.2 years ago briverog • 0

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754

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deseq2 ANOVA design interaction term

updated 4.3 years ago by Michael Love 37k • written 4.3 years ago by tarun2 • 0

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2.9k

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deseq2 sva interaction term grouping variable deseq

4.3 years ago kevin.kingsland ▴ 60

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deseq2 interaction term

updated 4.7 years ago by Michael Love 37k • written 4.7 years ago by sofiagreen72211 ▴ 10

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deseq2 multiple factor design nested design interaction term

updated 5.0 years ago by Michael Love 37k • written 5.0 years ago by zahra.aboukhalil • 0

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deseq2 deseq limma interaction term

updated 5.1 years ago by Simon Anders ★ 3.7k • written 5.1 years ago by sbcn ▴ 70

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Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0

Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.

Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values by wahaha • 0

I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…

Answer: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…

Comment: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…

Comment: Rsamtools is not available for (for R version 4.0.2) by olinares-perdomo • 0

I had the same problem (R 4.2.0) I used BiocManager::install("Rsamtools", force = TRUE) And it is working fine

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Answer: DESeq2 how to specify contrast to test difference of differences

Comment: DESeq2 how to specify contrast to test difference of differences

Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a

Answer: biomaRt error unable to fix: need help troubleshooting

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

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Scholar to Nicole • 0

Teacher to Michael Love 37k