Bioconductor Interaction term

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7.8k

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deseq2 extracting contrasts rnaseq interaction term

updated 6.7 years ago by swbarnes2 ★ 1.4k • written 6.7 years ago by Amit Indap ▴ 10

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5.3k

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deseq2 multiple factor design nested design interaction term

updated 7.8 years ago by Michael Love 43k • written 7.8 years ago by zahra.aboukhalil • 0

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4.1k

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deseq2 interaction term

updated 7.5 years ago by Michael Love 43k • written 7.5 years ago by sofiagreen72211 ▴ 10

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5.6k

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deseq2 sva interaction term grouping variable deseq

7.1 years ago kevin.kingsland ▴ 70

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1.8k

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deseq2 ANOVA design interaction term

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by tarun2 • 0

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2.0k

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deseq2 design interaction term R

written 7.1 years ago by briverog • 0

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2.0k

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deseq2 multiple factor design interaction term

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by Giovanni Bacci • 0

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1.3k

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deseq2 interaction term multiple groups betaprior

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by tarun2 • 0

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1.6k

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deseq2 lfcshrink interaction term

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by krutherford • 0

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2.6k

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deseq2 interaction term

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by Cece • 0

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946

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deseq2 interaction term

6.5 years ago guipagui • 0

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2.5k

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deseq2 deseq limma interaction term

updated 7.9 years ago by Simon Anders ★ 3.8k • written 7.9 years ago by sbcn ▴ 80

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1.2k

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deseq2 multifactor interaction term gender effect 3-factors

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by kmu004 ▴ 50

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Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by earntodiesaz • 0

I'm delighted to have the chance to engage in conversation with your blog; I'm looking forward to reading more posts that can be relied upo…

Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana by earntodiesaz • 0

To be honest with you, I must say that it was an exceptionally good post. Writing it down and reading it during my lunch break was a very e…

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Gordon Smyth 52k

I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Devin ▴ 10

Thank you, Gordon, for your responses to all of my questions. For analysis A), in the case when a patient has either a missing timepoint or…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thanks Michael. Just out of curiosity, would you also use the same technique for things like clustering analysis or when looking at the abn…

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Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using TPM from tximport of Salmon output for singscore

Comment: Using TPM from tximport of Salmon output for singscore

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