Bioconductor Interactionset

Showing : interactionset • reset

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DEGcomparison DESeq2 InteractionSet pvalue

12 weeks ago • updated 11 weeks ago paria.alipour • 0

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671

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InteractionSet GInteractions

4 months ago Sarah ▴ 10

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444

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InteractionSet subsetByOverlaps GenomicInteractions

10 months ago LaureTomas ▴ 10

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796

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InteractionSet BuildReport

15 months ago martin.grigorov ▴ 10

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1.0k

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InteractionSet

2.8 years ago noag • 0

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861

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S4 Rcpp InteractionSet IRanges Rle

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by lklei001 • 0

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846

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diffHic HiC InteractionSet

updated 4.1 years ago by Aaron Lun ★ 28k • written 4.1 years ago by girardot • 0

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1.2k

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genomicinteractions gviz interactionset

updated 5.4 years ago by liz.ingsimmons ▴ 140 • written 5.4 years ago by ferbecneu • 0

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1.3k

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interactionset granges

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by Vinicius Henrique da Silva ▴ 40

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1.2k

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diffhic hic interactionset contactmatrix inflate

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by hwick1 ▴ 20

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1.3k

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diffhic interactionset

7.8 years ago Vivek.b ▴ 100

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1.1k

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InteractionSet structural variants

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by tangming2005 ▴ 190

12 results • Page 1 of 1

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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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