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interactionset
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0
votes
2
replies
316
views
Converting a GInteractions object to a dataframe
InteractionSet
13 months ago
noag
• 0
0
votes
1
reply
353
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 2.2 years ago by
Aaron Lun
★ 27k • written 2.2 years ago by
lklei001
• 0
0
votes
1
reply
312
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 2.3 years ago by
Aaron Lun
★ 27k • written 2.3 years ago by
girardot
• 0
0
votes
2
replies
590
views
Visualizing 4c-seq as arc
genomicinteractions
gviz
interactionset
updated 3.7 years ago by
liz.ingsimmons
▴ 140 • written 3.7 years ago by
ferbecneu
• 0
2
votes
1
reply
798
views
Error to rename seqlevels in Granges interactions
interactionset
granges
updated 4.1 years ago by
Aaron Lun
★ 27k • written 4.1 years ago by
Vinicius Henrique da Silva
▴ 40
2
votes
1
reply
630
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 4.8 years ago by
Aaron Lun
★ 27k • written 4.8 years ago by
hwick1
▴ 20
1
vote
5
replies
869
views
diffHiC differential HiC analysis starting from Ginteractions object
diffhic
interactionset
6.0 years ago
Vivek.b
▴ 100
2
votes
1
reply
711
views
cluster (only one end overlapping) breakpoints using InteractionSet
InteractionSet
structural variants
updated 6.1 years ago by
Aaron Lun
★ 27k • written 6.1 years ago by
tangming2005
▴ 190
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Comment: Retrieve gene summary start/end in biomart query
by
rbenel
▴ 20
Hi Mike, I have tried the query without the transcript, and I believe there are cases where I will receive unique transcript start/end si…
Comment: MMDiff2 memory issues
by
e.iich
• 0
running against a similar issue. Have you found any solutions?
Answer: mapToAlignments_issue
by
Hervé Pagès
15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution
by
James W. MacDonald
60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric
by
Eddie
• 0
Worked well under pROC. Thank you
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
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