Bioconductor Interactionset

Showing : interactionset • reset

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DEGcomparison DESeq2 InteractionSet pvalue

11 months ago paria.alipour • 0

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InteractionSet GInteractions

12 months ago Sarah ▴ 10

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686

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InteractionSet subsetByOverlaps GenomicInteractions

18 months ago LaureTomas ▴ 10

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1.1k

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InteractionSet BuildReport

2.0 years ago martin.grigorov ▴ 10

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InteractionSet

3.5 years ago noag • 0

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1.2k

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S4 Rcpp InteractionSet IRanges Rle

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by lklei001 • 0

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1.1k

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diffHic HiC InteractionSet

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by girardot • 0

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1.5k

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genomicinteractions gviz interactionset

updated 6.1 years ago by liz.ingsimmons ▴ 140 • written 6.1 years ago by ferbecneu • 0

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1.5k

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interactionset granges

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by Vinicius Henrique da Silva ▴ 40

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1.5k

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diffhic hic interactionset contactmatrix inflate

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by hwick1 ▴ 20

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1.6k

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diffhic interactionset

8.5 years ago Vivek.b ▴ 100

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1.2k

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InteractionSet structural variants

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by tangming2005 ▴ 200

12 results • Page 1 of 1

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Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

Comment: Recount3 data correspond to TCGA data by Leonardo Collado Torres ★ 1.1k

Thanks @fep29! ^^

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

I am in a similar situation. So, I have a matrix of beta values with row names as probe ids (which are annotated to hg38 as it is from harm…

Votes

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

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Popular Question to Robert Castelo ★ 3.4k

Popular Question to Robert Ivanek ▴ 750