Biostar Interactionset

Showing : interactionset • reset

votes

replies

143

views

InteractionSet

9 weeks ago noag • 0

votes

185

views

S4 Rcpp InteractionSet IRanges Rle

updated 15 months ago by Aaron Lun ★ 27k • written 15 months ago by lklei001 • 0

votes

166

views

diffHic HiC InteractionSet

updated 17 months ago by Aaron Lun ★ 27k • written 17 months ago by girardot • 0

votes

replies

440

views

genomicinteractions gviz interactionset

updated 2.8 years ago by liz.ingsimmons ▴ 140 • written 2.8 years ago by ferbecneu • 0

votes

567

views

interactionset granges

updated 3.2 years ago by Aaron Lun ★ 27k • written 3.2 years ago by Vinicius Henrique da Silva ▴ 40

votes

503

views

diffhic hic interactionset contactmatrix inflate

updated 3.9 years ago by Aaron Lun ★ 27k • written 3.9 years ago by hwick1 ▴ 20

vote

replies

752

views

diffhic interactionset

5.1 years ago Vivek.b ▴ 100

votes

600

views

InteractionSet structural variants

updated 5.1 years ago by Aaron Lun ★ 27k • written 5.2 years ago by tangming2005 ▴ 170

8 results • Page 1 of 1

Recent ...

Replies

Answer: Reading vcf file with readVcf by James W. MacDonald 58k

Usually when you run out of RAM, you usually get an error saying that 'R couldn't allocate a vector of size <some number>'. When it just sa…

Answer: Genic annotations of whole hg38 by James W. MacDonald 58k

What exactly do you mean by 'proportion of genic annotations'? One possibility would be to see what proportion of all the exons are covered…

Answer: Understanding output of Negative Binomial in DESeq2 by Michael Love 34k

> Does this mean that there are seven genes in total that will have significant adjusted p-value? yes > i recall when multiple linea…

Answer: VST transformation and covariates in the TCGA TARGET GTEx dataset by Michael Love 34k

The above sounds fine to me. I do not recommend adding 1 to all expected counts for DESeq2. It is strange that every gene contains a …

Answer: Swish direction of comparison based on order of factors by Michael Love 34k

hi Jean, Thanks for the question, this wasn't explicitly stated in the documentation, so I've updated it, here are the new sections in m…

Votes

Answer: Swish direction of comparison based on order of factors

Comment: Gradient dotplot

Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi

Answer: Effect size using likelihood ratio test in DESeq2

Comment: ggtree install

Awards • All

Scholar to Gordon Smyth 43k

Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Hans-Ulrich Klein ▴ 330