Showing : interactionset • reset
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Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4 Rcpp InteractionSet IRanges Rle
updated 11 months ago by ★ 26k • written 11 months ago by • 0
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How to load counts from existing count matrices in diffHic package
diffHic HiC InteractionSet
updated 12 months ago by ★ 26k • written 12 months ago by • 0
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2
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Visualizing 4c-seq as arc
genomicinteractions gviz interactionset
updated 2.4 years ago by ▴ 140 • written 2.4 years ago by • 0
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467
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Error to rename seqlevels in Granges interactions
interactionset granges
updated 2.9 years ago by ★ 26k • written 2.9 years ago by ▴ 40
2
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449
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Inflating interactionSets into a contact matrix
diffhic hic interactionset contactmatrix inflate
updated 3.5 years ago by ★ 26k • written 3.5 years ago by ▴ 20
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diffHiC differential HiC analysis starting from Ginteractions object
diffhic interactionset
4.8 years ago Vivek.b ▴ 100
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cluster (only one end overlapping) breakpoints using InteractionSet
InteractionSet structural variants
updated 4.8 years ago by ★ 26k • written 4.8 years ago by ▴ 160
7 results • Page 1 of 1
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Answer: limma - removing samples? by Gordon Smyth 42k
In general, it is best to analyse each independent dataset with all the samples as it was originally analysed. There is no need to restrict…
Comment: DESeq2 Model Design by Michael Love 32k
Hi, I'm sorry but I don't have time at the moment to provide guidance on setting up the statistical analysis for user's datasets. I recomm…
Comment: Error wth Installation BiocManager by Martin Morgan 25k
And to be clear, does ``` readLines("https://bioconductor.org/config.yaml") ``` work? (or with `http://`)? If not, then it is definitely a …
Comment: DESeq2 Model Design by drives • 0
Hello, This particular thread has been incredibly useful. Thanks so much. I am slightly confused about comparing treatments. I have a data…
Comment: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ? by Michael Love 32k
I don't use `offset` in the DESeq2 vignette. I use `glm.offset`. See the last section the cqn vignette.
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Answer: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ?
C: Adjust for multiple batches using combat
A: Adjust for multiple batches using combat
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