Bioconductor Genomicinteractions

Showing : genomicinteractions • reset

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600

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InteractionSet subsetByOverlaps GenomicInteractions

14 months ago LaureTomas ▴ 10

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720

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

3.2 years ago koushik • 0

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1.8k

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diffHic GenomicInteractions edgeR HiC cooler

updated 4.1 years ago by Aaron Lun ★ 28k • written 4.1 years ago by Marco Blanchette ▴ 30

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duplicate GenomicInteractions

4.3 years ago dogancan • 0

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GenomicInteractions

4.5 years ago chang.jiaming • 0

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1.3k

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GenomicInteractions gviz

updated 4.6 years ago by liz.ingsimmons ▴ 140 • written 4.6 years ago by Marco Blanchette ▴ 30

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884

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genomicInteractions annotation

updated 5.3 years ago by liz.ingsimmons ▴ 140 • written 5.3 years ago by ls760 • 0

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1.5k

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GenomicInteractions Gviz

updated 5.4 years ago by liz.ingsimmons ▴ 140 • written 5.4 years ago by Nik dAK ▴ 10

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genomicinteractions gviz interactionset

updated 5.8 years ago by liz.ingsimmons ▴ 140 • written 5.8 years ago by ferbecneu • 0

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1.5k

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genomicinteractions

7.0 years ago sarvesh.nikumbh ▴ 10

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2.8k

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gviz genomicinteractions

8.4 years ago enricoferrero ▴ 660

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1.2k

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genomicinteractions GRanges

updated 8.6 years ago by liz.ingsimmons ▴ 140 • written 8.6 years ago by tangming2005 ▴ 200

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GenomicInteractions

updated 8.7 years ago by Malcolm Perry ▴ 40 • written 8.7 years ago by tangming2005 ▴ 200

13 results • Page 1 of 1

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Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by Guido Hooiveld ★ 4.1k

Thanks James! I indeed missed the obvious... all clear now!

Comment: How to read OSCA book? by zr • 0

Got it, that had really confused me a bit, thank you for your help!

Comment: How to use removeBatchEffect for removing effect of multiple confounding variabl by James W. MacDonald 67k

Please don't add questions onto a four-year old post. Instead, start a new one. If you want to reference the old post, that's fine.

Answer: How to use removeBatchEffect for removing effect of multiple confounding variabl by bioinformata • 0

Is it feasible to remove batch effect with limma after variance stabilizing transformation of the gene expression , or is eough to use vst…

Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by James W. MacDonald 67k

Hi Guido, It's that last filtering step. You are saying the NCBI Gene ID has to be unique AND the ontology has to be BP, which isn't what …

Votes

Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th

Answer: How to read OSCA book?

DESeq2 design and contrasts with 2 drug-treated and one control group

Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th

Awards • All

Scholar to Lluís Revilla Sancho ▴ 750