Bioconductor Genomicinteractions

Showing : genomicinteractions • reset

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InteractionSet subsetByOverlaps GenomicInteractions

9 months ago LaureTomas ▴ 10

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600

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

2.8 years ago koushik • 0

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1.6k

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diffHic GenomicInteractions edgeR HiC cooler

updated 3.6 years ago by Aaron Lun ★ 28k • written 3.6 years ago by Marco Blanchette ▴ 30

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duplicate GenomicInteractions

3.9 years ago dogancan • 0

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GenomicInteractions

4.1 years ago chang.jiaming • 0

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GenomicInteractions gviz

updated 4.2 years ago by liz.ingsimmons ▴ 140 • written 4.2 years ago by Marco Blanchette ▴ 30

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genomicInteractions annotation

updated 4.8 years ago by liz.ingsimmons ▴ 140 • written 4.9 years ago by ls760 • 0

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GenomicInteractions Gviz

updated 4.9 years ago by liz.ingsimmons ▴ 140 • written 4.9 years ago by Nik dAK ▴ 10

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genomicinteractions gviz interactionset

updated 5.4 years ago by liz.ingsimmons ▴ 140 • written 5.4 years ago by ferbecneu • 0

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genomicinteractions

6.6 years ago sarvesh.nikumbh ▴ 10

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gviz genomicinteractions

8.0 years ago enricoferrero ▴ 660

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genomicinteractions GRanges

updated 8.2 years ago by liz.ingsimmons ▴ 140 • written 8.2 years ago by tangming2005 ▴ 190

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GenomicInteractions

updated 8.3 years ago by Malcolm Perry ▴ 40 • written 8.3 years ago by tangming2005 ▴ 190

13 results • Page 1 of 1

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Answer: Differentially expressed genes in monocle pseudotime by Gordon Smyth 50k

You might try the methods in this paper: Cheng J, Smyth GK*, Chen Y* (2023). Unraveling the timeline of gene expression: A pseudotempora…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you Michael for your attention to my question. I am truly grateful. I subsetted the data using lines of codes to include only the g…

Comment: [DiffBind] Obtaining normalization factors by Henry ▴ 10

I see, thank you for your suggestion! I managed to use a separate RLE normalization to obtain the size factors.

Answer: Memory errors using read.bismark? by Peter Hickey ▴ 690

Thanks for sharing an example file. This is a very large non-CpG methylation dataset, which are tricky to work with for a number of reason…

Comment: Reading huge bismark coverage files using bbseq::read.bismark by Peter Hickey ▴ 690

Superficially, your issue is similar to [https://github.com/hansenlab/bsseq/issues/136](https://github.com/hansenlab/bsseq/issues/136). You…

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Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA

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