Bioconductor KaryoploteR

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

12 months ago Shreyash ▴ 10

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1.4k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 19 months ago by James W. MacDonald 65k • written 19 months ago by rtt100 • 0

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821

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KaryoploteR

updated 3.7 years ago by Kevin Blighe ★ 3.9k • written 3.7 years ago by mpigozzi • 0

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2.8k

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karyoploter

updated 4.7 years ago by bernatgel ▴ 150 • written 4.7 years ago by Aditya ▴ 160

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849

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karyoploteR

updated 5.0 years ago by bernatgel ▴ 150 • written 5.0 years ago by saeed Ur Rehman • 0

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1.9k

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software error R bsgenome karyoploter

updated 6.5 years ago by bernatgel ▴ 150 • written 6.5 years ago by kirannbishwa01 ▴ 10

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karyoploter

updated 6.6 years ago by bgel ▴ 10 • written 6.6 years ago by spr ▴ 10

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KaryoploteR

6.8 years ago Radek ▴ 90

8 results • Page 1 of 1

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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0

Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…

Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k

I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …

Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…

Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0

Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k

Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…

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Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

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Scholar to Rory Stark ★ 5.2k

Popular Question to tangming2005 ▴ 190