Bioconductor KaryoploteR

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2.8k

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karyoploter

updated 4.7 years ago by bernatgel ▴ 150 • written 4.7 years ago by Aditya ▴ 160

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1.9k

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software error R bsgenome karyoploter

updated 6.5 years ago by bernatgel ▴ 150 • written 6.5 years ago by kirannbishwa01 ▴ 10

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1.4k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 19 months ago by James W. MacDonald 65k • written 19 months ago by rtt100 • 0

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1.2k

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karyoploter

updated 6.6 years ago by bgel ▴ 10 • written 6.6 years ago by spr ▴ 10

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871

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KaryoploteR

6.8 years ago Radek ▴ 90

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852

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karyoploteR

updated 5.0 years ago by bernatgel ▴ 150 • written 5.0 years ago by saeed Ur Rehman • 0

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821

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KaryoploteR

updated 3.7 years ago by Kevin Blighe ★ 3.9k • written 3.7 years ago by mpigozzi • 0

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464

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

12 months ago Shreyash ▴ 10

8 results • Page 1 of 1

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…

Answer: Handling multiple differential expression comparisons by Michael Love 41k

It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…

Comment: Too many significant genes when integrating gtex and tcga by ATpoint ★ 4.1k

These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…

Answer: fgsea significant result by ATpoint ★ 4.1k

Set a fixed seed before running this. Note that a FDR of 0.25 in fgsea is wildly and overly lenient. See https://support.bioconductor.o…

Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

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Print Differentially Expressed Exons From Dexseq Results

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

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