Showing : limma contrast matrix • reset
3
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edgeR design matrix and contrasts: how to make contrast between groups that aren't shown in the design matrix columns?
edger design and contrast matrix contrast limma contrast matrix limma
updated 5.0 years ago by 47k • written 5.0 years ago by ▴ 20
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4
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6.2k
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Limma design and contrast matrix
limma limma design matrix limma contrast matrix
6.9 years ago donny.dw • 0
2
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8
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3.6k
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limma interaction contrasts
limma contrast matrix limma design matrix limma
updated 5.8 years ago by ★ 28k • written 5.8 years ago by ▴ 20
4
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3
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2.7k
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limma: model/contrast matrix for 2x3 factorial design
limma multifactorial design design and contrast matrix limma design matrix limma contrast matrix
updated 6.8 years ago by 47k • written 6.8 years ago by • 0
7
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4
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2.6k
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Limma contrast for variables disease, gender and age
limma design matrix limma limma contrast matrix microarrays
6.6 years ago miyuki_iii ▴ 10
1
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6
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2.5k
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Multiple testing limma contrasts
limma limma voom limma contrast matrix multiple testing correction
updated 5.9 years ago by 62k • written 5.9 years ago by ▴ 10
2
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15
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2.2k
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limma: how to use pairing and adjust for covariates
limma limma-voom limma paired analysis limma contrast matrix
updated 5.9 years ago by ★ 28k • written 5.9 years ago by ▴ 10
3
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5
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1.6k
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Limma-voom contrast confusion
limma limma voom limma design matrix limma contrast matrix limma paired analysis
updated 6.0 years ago by ★ 28k • written 6.0 years ago by ▴ 10
5
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3
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1.6k
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Correct contrast for testing multi-level interaction effect in limma using combined factors design matrix
limma contrast matrix limma design matrix limma rna-seq limma voom
updated 5.8 years ago by ★ 28k • written 5.8 years ago by • 0
1
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5
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1.3k
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Limma: paired multifactor analysis
limma limma design matrix limma contrast matrix limma paired analysis limma-voom
updated 6.0 years ago by 47k • written 6.0 years ago by ▴ 10
1
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2
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1.0k
views
Limma design matrix for three-treatment crossover study
limma design matrix limma limma contrast matrix crossover study
updated 6.3 years ago by ★ 28k • written 6.3 years ago by ▴ 10
0
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4
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967
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contrast matrix design for a comparison (trend) of drug concentrations
limma contrast matrix affymetrix microarrays limma
updated 6.2 years ago by ★ 28k • written 6.2 years ago by ▴ 840
1
vote
4
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891
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Methylation EPIC annotation - the logFC values represented as boxplots
probe to gene id logFC illuminahumanmethylationepicanno.ilm10b2.hg19 limma contrast matrix
updated 4.9 years ago by 62k • written 4.9 years ago by • 0
1
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5
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819
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Question about contrast matrix using limma
limma rna-seq limma contrast matrix
updated 6.9 years ago by 47k • written 6.9 years ago by • 0
3
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2
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761
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Creating a correct limma model with respect to contrast matrix and design matrix
limma limma contrast matrix limma design matrix
updated 4.4 years ago by ★ 28k • written 4.4 years ago by • 0
0
votes
2
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611
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Help with limma contrast/design matrices
limma contrast matrix
6.2 years ago mat149 ▴ 70
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Comment: Which input file is used for DGEList in EgdeR? by mohammedtoufiq91 ▴ 10
Thank you @gordonsmyth My collaborator asked me to test this pipeline with `egdeR` package. We are interested at gene level analysis only…
Answer: Why in Bioconductor community people rarely upvote questions? by Gordon Smyth 47k
I think it is a good idea to start a discussion with correct information. Looking back through Bioconductor Support records, it is not at a…
Comment: How to identify top most variable genes from log2 normalized data? by Gordon Smyth 47k
Your code doesn't look right to me. I think you're using order() where sort() would be more appropriate. To order your cpm matrix by row v…
Comment: How to load fasta file with openPrimeR? by Santiago Edilberto • 0
> library(openPrimeR) There are missing/non-functioning external tools. To use the full potential of openPrimeR, please mak…
Answer: Which input file is used for DGEList in EgdeR? by Gordon Smyth 47k
I use and recommend featureCounts. Despite all that has been written on this topic, I still think that direct gene counting is faster and m…
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Answer: Which input file is used for DGEList in EgdeR?
Answer: Identifying DEGs using lfcshrink()
Answer: Is this DESeq2 interactions design correct?
Comment: STRINGdb string_db$map error
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
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