Showing : limma • reset
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two color arrays normalization
limma limma
updated 17.0 years ago by ★ 2.0k • written 17.1 years ago by ▴ 110
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10
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2.6k
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Harsh results using limma!
limma limma
updated 21.6 years ago by ▴ 810 • written 21.6 years ago by ★ 3.4k
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9
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2.6k
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(no subject)
limma limma
updated 21.4 years ago by ▴ 10 • written 21.4 years ago by ▴ 30
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12
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4.6k
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Understanding limma, fdr and topTable
Microarray GO limma Microarray GO limma
updated 17.7 years ago by ▴ 10 • written 17.7 years ago by ▴ 160
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7
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2.4k
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Limma and time-course data
limma limma
updated 20.0 years ago by 53k • written 20.0 years ago by ★ 3.4k
13
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21
replies
8.4k
views
modeling zero-dominated RNA-seq with voom/limma and hurdle models (pscl)
limma voom hurdle single cell
10.5 years ago osa.zuta ▴ 40
0
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10
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3.6k
views
Very low P-values in limma
miRNA limma microRNA miRNA limma microRNA
updated 16.3 years ago by ▴ 40 • written 16.4 years ago by ★ 1.3k
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6
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5.2k
views
batch effect confounded with condition
GO limma GO limma
14.0 years ago Tefina Paloma ▴ 220
0
votes
13
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3.1k
views
statistical test for time course data
Cancer limma edgeR Cancer limma edgeR
updated 13.1 years ago by 53k • written 13.1 years ago by ▴ 260
2
votes
15
replies
4.5k
views
Annotation of Affy Porcine Gene 1.0 ST array data
limma oligo annotation
updated 7 months ago by • 0 • written 11.2 years ago by • 0
0
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15
replies
3.3k
views
Exon array annotation with limma?
Normalization limma biomaRt oneChannelGUI Normalization limma biomaRt oneChannelGUI
updated 16.2 years ago by ▴ 500 • written 16.2 years ago by ▴ 220
0
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9
replies
2.3k
views
is-normalisation-really-required
limma limma
20.9 years ago vijayaraj nagarajan ▴ 80
0
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7
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2.4k
views
limma
Normalization limma Normalization limma
updated 21.6 years ago by ▴ 100 • written 21.6 years ago by ▴ 80
0
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6
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3.0k
views
venn diagram
Microarray affy limma Microarray affy limma
updated 16.6 years ago by ▴ 300 • written 16.6 years ago by ▴ 20
2
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30
replies
5.8k
views
create design matrix when 2 groups of gene-expression data
limma
10.1 years ago • updated 9.8 years ago mheydarpour ▴ 10
6
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25
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5.2k
views
How to import normalized file (using xps) to limma for differential expressed genes?
xps heatmap limma
updated 9.9 years ago by ★ 3.9k • written 9.9 years ago by ▴ 120
7
votes
9
replies
6.6k
views
LIMMA: interpreting interaction terms in an unbalanced factorial design with repeated measures
LIMMA FACTORIAL REPEATED MEASURES differential gene expression
10.5 years ago • updated 10.3 years ago robert.maughan • 0
2
votes
25
replies
8.8k
views
How to use Limma to analyze differences among group items without doing pairwise comparisons
limma
9.8 years ago sami.pietila • 0
4
votes
6
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5.4k
views
How do I use Limma to produce expression for each group, their P value and adjusted P value, together with affy probe_id and gene symbol
LIMMA
updated 10.8 years ago by 68k • written 10.8 years ago by ▴ 30
0
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6
replies
1.7k
views
OSX location of bioconductor functions
limma limma
updated 19.0 years ago by 68k • written 19.0 years ago by ▴ 60
0
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5
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2.0k
views
single color microarray analysis
Microarray Normalization probe affy limma Microarray Normalization probe affy limma
updated 21.0 years ago by 53k • written 21.0 years ago by ▴ 120
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10
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2.3k
views
Limma final gene expression report
limma limma
updated 20.8 years ago by 53k • written 20.8 years ago by ▴ 230
1
vote
13
replies
7.1k
views
edgeR vs voom
edger voom limma
10.6 years ago dongamit123 ▴ 20
0
votes
7
replies
4.2k
views
Is anyone able to explain the statistics behind the dmpFinder function in minfi package?
minfi methylation dmpfinder limma
updated 8.8 years ago by • 0 • written 9.5 years ago by ▴ 20
0
votes
7
replies
3.0k
views
Limma: questions about data pre-processing
Annotation limma Annotation limma
14.1 years ago • updated 14.0 years ago Vladimir Krasikov ▴ 90
0
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6
replies
4.3k
views
limma, analysis on subset of data gives completely different results
limma limma
updated 23 months ago by 53k • written 11.6 years ago by ▴ 40
0
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4
replies
1.5k
views
win 64bit and general BioC computing power?
GO Clustering affy limma gcrma PROcess GO Clustering affy limma gcrma PROcess
updated 21.7 years ago by ▴ 360 • written 21.7 years ago by ▴ 940
0
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12
replies
3.2k
views
Advice with RemoveBatchEffect and Rank Product package
limma limma
13.5 years ago Y. Osee Sanogo ▴ 30
5
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4
replies
5.4k
views
limma, reference group, covariate
limma reference group covariate
11.2 years ago alakatos ▴ 130
0
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6
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5.8k
views
Question about quantile normalization and NA value
Microarray Normalization limma Microarray Normalization limma
updated 12.1 years ago by ▴ 20 • written 12.1 years ago by ▴ 10
0
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15
replies
3.7k
views
PreFiltering probe in microarray analysis
Microarray limma oligo Microarray limma oligo
updated 14.7 years ago by ▴ 220 • written 14.8 years ago by ▴ 30
4
votes
4
replies
2.8k
views
limma for spectral counts
limma limma
updated 15.4 years ago by ▴ 70 • written 15.4 years ago by ▴ 120
0
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4
replies
1.9k
views
Positive correlation between dye-swap technical replicates
Normalization Clustering probe limma GLAD Normalization Clustering probe limma GLAD
16.1 years ago Michał Góralski ▴ 40
0
votes
4
replies
1.6k
views
Recent changes to Bioconductor packages
Normalization hgu95a hgu95av2 annotate reposTools limma Normalization hgu95a hgu95av2
22.8 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
6
replies
1.9k
views
link to KEGG
limma limma
updated 16.1 years ago by ▴ 300 • written 16.1 years ago by ▴ 200
9
votes
10
replies
6.0k
views
Simple significance test functions from R packages limma and plsgenomics
limma plsgenomics microarray differential gene expression
updated 11.1 years ago by 53k • written 11.1 years ago by ▴ 10
0
votes
8
replies
2.6k
views
Different expression direction between limma microarray data analysis vs quantitative real time PCR result
Microarray limma Microarray limma
updated 16.4 years ago by ▴ 240 • written 16.5 years ago by ▴ 90
0
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4
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2.0k
views
limma - background correct method=none
limma limma
21.9 years ago Helen Cattan ▴ 100
0
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4
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2.0k
views
getting normexp (and log2 transformed) values - not further-processed M values
Microarray limma limmaGUI Microarray limma limmaGUI
16.4 years ago adoty@umd.edu ▴ 30
0
votes
4
replies
1.8k
views
cluster a set of genes based on another set of genes
Organism limma Organism limma
updated 19.1 years ago by ▴ 280 • written 19.1 years ago by ▴ 450
0
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5
replies
1.8k
views
Problem with limma - psigamma?
limma limma
22.0 years ago Matthew Hannah ▴ 940
0
votes
4
replies
1.6k
views
Recent changes to Bioconductor packages
limma limma
21.7 years ago • updated 21.6 years ago madman@jimmy.harvard.edu ▴ 850
0
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5
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2.1k
views
Limma Package to read cDNA data
limma limma
22.0 years ago Joyce Gu ▴ 200
0
votes
4
replies
1.5k
views
Limma: design matrix
Microarray limma Microarray limma
17.1 years ago Yolande Tra ▴ 160
0
votes
6
replies
2.0k
views
analysis of 70 groups for differential expression
limma limma
updated 18.5 years ago by 53k • written 18.5 years ago by ★ 1.3k
0
votes
5
replies
1.8k
views
Normalization for different amts of RNA in limma
Normalization limma Normalization limma
updated 21.8 years ago by ★ 6.0k • written 21.8 years ago by ▴ 100
1
vote
5
replies
4.4k
views
Using Limma for proteomics (2D DIGE) datasets
Proteomics limma impute limmaGUI Proteomics limma impute limmaGUI
updated 10.7 years ago by • 0 • written 16.4 years ago by ▴ 60
0
votes
4
replies
1.6k
views
Recent changes to Bioconductor packages
limma Rintact limma Rintact
22.2 years ago • updated 22.1 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
4
replies
1.9k
views
Re: limma and affy (fwd)
limma limma
22.7 years ago Gordon Smyth 53k
0
votes
10
replies
2.3k
views
Deciding on a cut off after QC
limma limma
20.8 years ago Ankit Pal ▴ 230
4,232 results • Page 1 of 85
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Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by strawberry3 • 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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