Bioconductor LncRNA

Showing : lncRNA • reset

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231

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lncRNA probeID mRNA genesymbol

9 months ago Sooni ▴ 10

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1.2k

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recount RNAseq gencode lncRNA gene annotation

updated 4.6 years ago by chris.wilks ▴ 70 • written 4.7 years ago by francesco.gandolfi ▴ 20

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1.3k

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GenomicFeatures TPM FPKM lncRNA

5.5 years ago Ina Hoeschele ▴ 620

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2.6k

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lncRNA featureCounts STAR annotation

updated 5.5 years ago by Wei Shi ★ 3.5k • written 5.5 years ago by inah ▴ 10

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1.2k

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microarray lncrna microrna mrna raw data

updated 6.0 years ago by Axel Klenk ▴ 990 • written 6.0 years ago by ntagaras • 0

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2.9k

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arraystar lncRNA annotation annotationdbi

updated 8.3 years ago by xiangy7 • 0 • written 8.7 years ago by Kevin Coombes ▴ 430

6 results • Page 1 of 1

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Comment: Why is DMRcate not available for Bioconductor version 3.18? by Daniel E. Weeks ▴ 20

Thank you for the explanation and contacting the DSS package authors.

Comment: Why is DMRcate not available for Bioconductor version 3.18? by shepherl 3.6k

The DSS package authors just need to add `edgeR` to their Suggest of their DESCRIPTION. They have been contacted about it but have not acte…

Answer: GOslim missing GO term by James W. MacDonald 64k

I think it's because that GO term isn't an offspring of any term in the GO slim you are downloading. ``` > ids<- "GO:0002831" > slim <…

Answer: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…

Comment: DESeq2 - groups with biological replicates from the same patient by James W. MacDonald 64k

If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…

Votes

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k