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locateVariants
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4
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8
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TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from various chromosome being part of the same gene
MetID
TxDB.Hsapiens.UCSC.hg38.knownGene
locateVariants
GenomicFeatures
VariantAnnotation
23 months ago
davidhillis
• 0
0
votes
1
reply
805
views
Information about locateVariants function
genomiclocation
canonicaltranscripts
locateVariants
updated 3.4 years ago by
James W. MacDonald
68k • written 3.4 years ago by
Paola
• 0
2
votes
2
replies
1.7k
views
[VariantAnnotation] Preserve query metadata with locateVariants()
variantannotation
locatevariants
metadata
mcols
updated 7.2 years ago by
Valerie Obenchain
★ 6.8k • written 7.2 years ago by
enricoferrero
▴ 680
0
votes
1
reply
1.3k
views
predictCoding errors with: sequence ^1$ not found
variantannotation
predict coding
locateVariants
granges
7.3 years ago
tony j
• 0
0
votes
2
replies
1.8k
views
locateVariants function does not find an annotation for the locus
locatevariants
txdb.hsapiens.ucsc.hg19.knowngene
variantannotation
7.5 years ago
Aleksandra
• 0
0
votes
2
replies
1.7k
views
SNPs in multiple locations
txdb.hsapiens.ucsc.hg19.knowngene
ucsc
annotation
locatevariants
variantannotation
updated 7.6 years ago by
Valerie Obenchain
★ 6.8k • written 7.6 years ago by
Lna
• 0
1
vote
23
replies
2.9k
views
Distance calculation for variants in intergenic regions
locatevariants
variantannotation
genomicfeatures
updated 8.3 years ago by
Michael Lawrence
★ 11k • written 8.3 years ago by
Lna
• 0
1
vote
4
replies
2.5k
views
variantAnnotation::locateVariants() with AllVariants(): why do some input variants not get annotated?
variantannotation
locatevariants
9.5 years ago
Jakob Goldmann
• 0
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