Bioconductor LocateVariants

Showing : locateVariants • reset

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3.3k

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

2.9 years ago davidhillis • 0

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966

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genomiclocation canonicaltranscripts locateVariants

updated 4.4 years ago by James W. MacDonald 68k • written 4.4 years ago by Paola • 0

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2.1k

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variantannotation locatevariants metadata mcols

updated 8.1 years ago by Valerie Obenchain ★ 6.8k • written 8.1 years ago by enricoferrero ▴ 680

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1.5k

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variantannotation predict coding locateVariants granges

8.3 years ago tony j • 0

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locatevariants txdb.hsapiens.ucsc.hg19.knowngene variantannotation

8.5 years ago Aleksandra • 0

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txdb.hsapiens.ucsc.hg19.knowngene ucsc annotation locatevariants variantannotation

updated 8.6 years ago by Valerie Obenchain ★ 6.8k • written 8.6 years ago by Lna • 0

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4.0k

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locatevariants variantannotation genomicfeatures

updated 9.2 years ago by Michael Lawrence ★ 11k • written 9.2 years ago by Lna • 0

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2.8k

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variantannotation locatevariants

10.5 years ago • updated 10.4 years ago Jakob Goldmann • 0

8 results • Page 1 of 1

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Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20

Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?

Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0

Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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