Bioconductor LocateVariants

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

21 months ago davidhillis • 0

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781

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genomiclocation canonicaltranscripts locateVariants

updated 3.3 years ago by James W. MacDonald 67k • written 3.3 years ago by Paola • 0

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1.7k

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variantannotation locatevariants metadata mcols

updated 7.0 years ago by Valerie Obenchain ★ 6.8k • written 7.0 years ago by enricoferrero ▴ 660

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1.3k

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variantannotation predict coding locateVariants granges

7.2 years ago tony j • 0

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locatevariants txdb.hsapiens.ucsc.hg19.knowngene variantannotation

7.4 years ago Aleksandra • 0

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1.6k

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txdb.hsapiens.ucsc.hg19.knowngene ucsc annotation locatevariants variantannotation

updated 7.5 years ago by Valerie Obenchain ★ 6.8k • written 7.5 years ago by Lna • 0

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2.8k

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locatevariants variantannotation genomicfeatures

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by Lna • 0

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2.4k

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variantannotation locatevariants

9.3 years ago Jakob Goldmann • 0

8 results • Page 1 of 1

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Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Answer: EuroBioC2023 abstract submission closing soon! by excess.gecko.shso • 0

Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…

Answer: EuroBioC2024 abstract submission is open! by excess.gecko.shso • 0

EuroBioC2024 abstract submissions are now open! Join the Oxford conference from Sep 4-6. Submit your abstract by April 26 for short talks, …

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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