Bioconductor Locatevariants

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

8 months ago davidhillis • 0

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546

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genomiclocation canonicaltranscripts locateVariants

updated 2.2 years ago by James W. MacDonald 64k • written 2.2 years ago by Paola • 0

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1.2k

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variantannotation locatevariants metadata mcols

updated 5.9 years ago by Valerie Obenchain ★ 6.8k • written 6.0 years ago by enricoferrero ▴ 660

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1.1k

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variantannotation predict coding locateVariants granges

6.1 years ago tony j • 0

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locatevariants txdb.hsapiens.ucsc.hg19.knowngene variantannotation

6.3 years ago Aleksandra • 0

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1.2k

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txdb.hsapiens.ucsc.hg19.knowngene ucsc annotation locatevariants variantannotation

updated 6.4 years ago by Valerie Obenchain ★ 6.8k • written 6.4 years ago by Lna • 0

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2.1k

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locatevariants variantannotation genomicfeatures

updated 7.0 years ago by Michael Lawrence 11k • written 7.0 years ago by Lna • 0

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2.0k

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variantannotation locatevariants

8.3 years ago • updated 8.2 years ago Jakob Goldmann • 0

8 results • Page 1 of 1

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Comment: Timely differentially expressed genes by triZZla • 0

Thanks, but what is the lowest that you have seen in such circumstances ? And did you have systematically calculated it actually or just re…

Comment: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i by ATpoint ★ 3.6k

What is the output of below_zero <- apply(miRNA_counts < 0, 1, sum) > 0 miRNA_counts[below_zero,,drop=FALSE]

Comment: Problem loading HDF5Array in R 4.3.2 by Mike Smith ★ 6.2k

Based on the error message this looks like the "invalid permissions" are referring to something in memory rather than your file system. If…

Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and by Aastha Kapoor • 0

After several attempts the code has worked. I connected to a faster internet connection. set the timeout (1000000) and run the command. I …

Comment: DESeq2 estimateSizeFactors iterate takes too long by Karthik • 0

Hello, I agree with you, and we are in process of working with collaborators, but I wanted to get a general opinion on the data and get a …

Votes

Comment: Ensembl down???

Answer: Limma/DESeq2 for unbalanced nested design (paired samples)

Result from GSEA for non-model organism not as expected

Comment: DESeq2 estimateSizeFactors iterate takes too long

Answer: DESeq2 estimateSizeFactors iterate takes too long

Awards • All

Scholar to Mike Smith ★ 6.2k

Scholar to Hervé Pagès 16k