Bioconductor Locatevariants

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

21 months ago davidhillis • 0

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772

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genomiclocation canonicaltranscripts locateVariants

updated 3.2 years ago by James W. MacDonald 67k • written 3.2 years ago by Paola • 0

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1.7k

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variantannotation locatevariants metadata mcols

updated 7.0 years ago by Valerie Obenchain ★ 6.8k • written 7.0 years ago by enricoferrero ▴ 660

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1.3k

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variantannotation predict coding locateVariants granges

7.1 years ago tony j • 0

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1.8k

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locatevariants txdb.hsapiens.ucsc.hg19.knowngene variantannotation

7.3 years ago Aleksandra • 0

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1.6k

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txdb.hsapiens.ucsc.hg19.knowngene ucsc annotation locatevariants variantannotation

updated 7.5 years ago by Valerie Obenchain ★ 6.8k • written 7.5 years ago by Lna • 0

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2.8k

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locatevariants variantannotation genomicfeatures

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by Lna • 0

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2.4k

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variantannotation locatevariants

9.3 years ago Jakob Goldmann • 0

8 results • Page 1 of 1

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Comment: Feature Counts - potential bug with outfile.jcounts by Gordon Smyth 52k

I agree that the current behavior is not fully satisfactory and, indeed, it has prevented me from using the junction read counts from featu…

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi Gordon, Sorry, I didn't see the added response to your original answer. I think that would be a great idea; a novel junction to annot…

Comment: Cannot install GO.db and org.Hs.eg.db by Gabriel • 0

The downloaded source packages are in 'C:Users\gabri\AppData\Local\Temp\RtmpailNer\downloaded_packages' Installation paths not writeable, …

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi Gordon, Thank you for pointing out that FeatureCounts detects junction reads de novo. It is not in the manual, and maybe could be. Give…

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2 by Michael Love 43k

I've seen in some papers ~1 TPM for saying something in mouse/human etc. was "minimally expressed". For an average length gene, 10 count…

Votes

Answer: Mapping Between GenBank ID's and Uniprot

Comment: What type of counts data to import for performing Isoform analysis in edgeR

A: Relations used in GO.db GOBPANCESTOR

Relations used in GO.db GOBPANCESTOR

Answer: RSubread output significantly different from bash Subread output

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