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locateVariants
•
reset
4
votes
8
replies
719
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TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from various chromosome being part of the same gene
MetID
TxDB.Hsapiens.UCSC.hg38.knownGene
locateVariants
GenomicFeatures
VariantAnnotation
6 months ago
davidhillis
• 0
0
votes
1
reply
492
views
Information about locateVariants function
genomiclocation
canonicaltranscripts
locateVariants
updated 2.0 years ago by
James W. MacDonald
63k • written 2.0 years ago by
Paola
• 0
2
votes
2
replies
1.1k
views
[VariantAnnotation] Preserve query metadata with locateVariants()
variantannotation
locatevariants
metadata
mcols
updated 5.8 years ago by
Valerie Obenchain
★ 6.8k • written 5.8 years ago by
enricoferrero
▴ 660
0
votes
1
reply
1.0k
views
predictCoding errors with: sequence ^1$ not found
variantannotation
predict coding
locateVariants
granges
5.9 years ago
tony j
• 0
0
votes
2
replies
1.3k
views
locateVariants function does not find an annotation for the locus
locatevariants
txdb.hsapiens.ucsc.hg19.knowngene
variantannotation
6.1 years ago
Aleksandra
• 0
0
votes
2
replies
1.1k
views
SNPs in multiple locations
txdb.hsapiens.ucsc.hg19.knowngene
ucsc
annotation
locatevariants
variantannotation
updated 6.2 years ago by
Valerie Obenchain
★ 6.8k • written 6.2 years ago by
Lna
• 0
1
vote
23
replies
1.9k
views
Distance calculation for variants in intergenic regions
locatevariants
variantannotation
genomicfeatures
updated 6.9 years ago by
Michael Lawrence
11k • written 6.9 years ago by
Lna
• 0
1
vote
4
replies
1.9k
views
variantAnnotation::locateVariants() with AllVariants(): why do some input variants not get annotated?
variantannotation
locatevariants
8.1 years ago
Jakob Goldmann
• 0
8 results • Page
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Comment: Speeding up of DelayedArray::write_block()
by
Koki
▴ 10
I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…
Comment: DelayedArray::read_sparse_block
by
Koki
▴ 10
Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?
Comment: DelayedArray::read_sparse_block
by
Hervé Pagès
16k
> So do you means the specification change from DelayedArray's read_sparse_block to SparseArray's read_block_as_sparse will accelerate the …
Comment: DelayedArray::read_sparse_block
by
Koki
▴ 10
Thanks for your reply. So do you means the specification change from `DelayedArray`'s `read_sparse_block` to `SparseArray`'s `read_block_a…
Comment: DMRcate design
by
James W. MacDonald
63k
That's what identical context means.
Votes
Answer: What MetaPhlAn3 database was used in cMD 3?
Comment: Speeding up of DelayedArray::write_block()
Answer: DelayedArray::read_sparse_block
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
Comment: Timely differentially expressed genes
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