Showing : lpe • reset
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PLPE error
Microarray affy LPE PLPE Microarray affy LPE PLPE
15.2 years ago Dennis.Burian@faa.gov ▴ 90
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LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE affylmGUI Cancer gcrma LPE affylmGUI
updated 15.5 years ago by ▴ 70 • written 15.5 years ago by ★ 13k
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2
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LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE Cancer gcrma LPE
updated 15.5 years ago by ★ 1.6k • written 15.5 years ago by ▴ 70
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3
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
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A friendly mention of LPE package
LPE LPE
16.1 years ago pingzhao Hu ▴ 210
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3
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2.5k
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
18.2 years ago McGee, Monnie ▴ 300
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841
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LPE question
LPE LPE
18.2 years ago Jain, Nitin ▴ 70
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866
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incoherence with LPE
LPE LPE
18.6 years ago Jain, Nitin ▴ 70
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853
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LPE method based on RMA vs. MAS5
Preprocessing LPE Preprocessing LPE
18.6 years ago Jain, Nitin ▴ 70
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pools and tech rep
limma LPE limma LPE
18.9 years ago Ariel Chernomoretz ▴ 380
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1
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977
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FDR adjustment in LPE
LPE LPE
updated 18.9 years ago by ▴ 70 • written 18.9 years ago by ▴ 40
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1
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935
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local pooled error
LPE LPE
updated 19.0 years ago by ▴ 210 • written 19.0 years ago by ★ 1.3k
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LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
19.1 years ago Jain, Nitin ▴ 70
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1
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1.1k
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Help with LPE error message
LPE LPE
updated 19.1 years ago by ▴ 70 • written 19.1 years ago by ▴ 140
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805
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LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
19.2 years ago Harry Hurd ▴ 60
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1
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1.0k
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LPE errors
LPE LPE
updated 19.4 years ago by ▴ 70 • written 19.4 years ago by ▴ 40
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0
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1.0k
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LPE error and warnings
LPE LPE
19.4 years ago Stephanie Mewborn ▴ 40
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1
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1.2k
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problem with LPE
LPE LPE
updated 20.2 years ago by ▴ 30 • written 20.2 years ago by ▴ 720
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7
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1.6k
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Statistical comparison of low replicate affy data
affy gcrma siggenes LPE affy gcrma siggenes LPE
20.2 years ago Matthew Hannah ▴ 940
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Limma or something else ? plus Normalization question
Normalization affy limma LPE PROcess Normalization affy limma LPE PROcess
20.6 years ago Gordon Smyth 50k
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1
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947
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Limma or something else ? plus Normalization question
limma LPE PROcess limma LPE PROcess
updated 20.6 years ago by 50k • written 20.6 years ago by ▴ 720
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question about RMA and filtering
affy LPE affy LPE
20.8 years ago Phguardiol@aol.com ▴ 720
22 results • Page 1 of 1
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Comment: DESeq2 setting significant p-value by Dev • 0
after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…
Comment: Reading huge bismark coverage files using bbseq::read.bismark by jacques.imbert • 0
Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.
Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Votes
Comment: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
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