Showing : lpe • reset
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LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE affylmGUI Cancer gcrma LPE affylmGUI
updated 15.5 years ago by ▴ 70 • written 15.5 years ago by ★ 13k
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7
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Statistical comparison of low replicate affy data
affy gcrma siggenes LPE affy gcrma siggenes LPE
20.2 years ago Matthew Hannah ▴ 940
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3
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
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3
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2.6k
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
18.2 years ago McGee, Monnie ▴ 300
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2
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1.0k
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LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE Cancer gcrma LPE
updated 15.5 years ago by ★ 1.6k • written 15.5 years ago by ▴ 70
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982
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FDR adjustment in LPE
LPE LPE
updated 18.9 years ago by ▴ 70 • written 18.9 years ago by ▴ 40
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1
reply
941
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local pooled error
LPE LPE
updated 19.0 years ago by ▴ 210 • written 19.0 years ago by ★ 1.3k
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1
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problem with LPE
LPE LPE
updated 20.2 years ago by ▴ 30 • written 20.2 years ago by ▴ 720
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1.0k
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LPE errors
LPE LPE
updated 19.4 years ago by ▴ 70 • written 19.4 years ago by ▴ 40
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1
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955
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Limma or something else ? plus Normalization question
limma LPE PROcess limma LPE PROcess
updated 20.6 years ago by 50k • written 20.6 years ago by ▴ 720
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1
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1.1k
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Help with LPE error message
LPE LPE
updated 19.1 years ago by ▴ 70 • written 19.1 years ago by ▴ 140
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903
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PLPE error
Microarray affy LPE PLPE Microarray affy LPE PLPE
15.3 years ago Dennis.Burian@faa.gov ▴ 90
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899
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question about RMA and filtering
affy LPE affy LPE
20.8 years ago Phguardiol@aol.com ▴ 720
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944
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Limma or something else ? plus Normalization question
Normalization affy limma LPE PROcess Normalization affy limma LPE PROcess
20.6 years ago Gordon Smyth 50k
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LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
19.2 years ago Harry Hurd ▴ 60
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838
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LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
19.1 years ago Jain, Nitin ▴ 70
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828
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pools and tech rep
limma LPE limma LPE
18.9 years ago Ariel Chernomoretz ▴ 380
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857
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LPE method based on RMA vs. MAS5
Preprocessing LPE Preprocessing LPE
18.7 years ago Jain, Nitin ▴ 70
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873
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incoherence with LPE
LPE LPE
18.7 years ago Jain, Nitin ▴ 70
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0
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849
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LPE question
LPE LPE
18.2 years ago Jain, Nitin ▴ 70
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765
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A friendly mention of LPE package
LPE LPE
16.2 years ago pingzhao Hu ▴ 210
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1.0k
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LPE error and warnings
LPE LPE
19.4 years ago Stephanie Mewborn ▴ 40
22 results • Page 1 of 1
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Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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Answer: Cross-species analysis - how to compute the mid parent value?
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