Bioconductor Made4

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Biobase affy marray convert made4 Biobase affy marray convert made4

updated 18.4 years ago by Aedin Culhane ▴ 510 • written 18.4 years ago by Jenny Drnevich ★ 2.2k

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Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4

updated 18.0 years ago by Ken Simpson ▴ 70 • written 18.0 years ago by Jenny Drnevich ★ 2.2k

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Clustering Cancer CGH made4 Clustering Cancer CGH made4

17.8 years ago Richard Birnie ▴ 10

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Clustering Cancer CGH GLAD made4 Clustering Cancer CGH GLAD made4

17.7 years ago Aedin Culhane ▴ 510

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made4 made4

updated 17.6 years ago by Seth Falcon ★ 7.4k • written 17.6 years ago by Weiwei Shi ★ 1.2k

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Classification affy made4 Classification affy made4

updated 17.4 years ago by Aedin Culhane ▴ 510 • written 17.4 years ago by Heike Pospisil ▴ 310

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affy made4 affy made4

updated 17.4 years ago by Martin Morgan 25k • written 17.4 years ago by Jenny Drnevich ★ 2.2k

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made4 made4

16.9 years ago Aedin Culhane ▴ 510

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Network Clustering Cancer Yeast made4 Network Clustering Cancer Yeast made4

16.5 years ago Aedin Culhane ▴ 510

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Cancer made4 ASSIGN Cancer made4 ASSIGN

14.3 years ago Steve Lianoglou ★ 13k

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made4 made4

14.2 years ago xiangxue Guo ▴ 70

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made4 made4

14.2 years ago xiangxue Guo ▴ 70

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made4 made4

updated 13.9 years ago by Steve Shen ▴ 330 • written 13.9 years ago by Rohit Farmer ▴ 170

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Cancer graph made4 Cancer graph made4

13.5 years ago Aedin Culhane ▴ 510

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made4 made4

12.0 years ago Barbara Bo-Ju Shih ▴ 40

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made4 made4

updated 12.0 years ago by Aedin Culhane ▴ 510 • written 12.0 years ago by Valerie Obenchain ★ 6.8k

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Cancer made4 Cancer made4

12.0 years ago Aedin Culhane ▴ 510

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made4 plotarrays correspondence analysis ellipse

updated 8.5 years ago by Aedin Culhane ▴ 510 • written 8.9 years ago by maartenvandijk • 0

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

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Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length