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Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry proteomics metabolomics Tutorial
written 4.5 years ago by ★ 2.1k
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News: May Institute Computation and statistics for mass spectrometry and proteomics
conference mass spectrometry proteomics News
5.4 years ago shepherl 4.1k
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5
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2.4k
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Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
5.5 years ago wang.lingjue • 0
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Scans vs Spectra
mass spectrometry mzr/ msnbase
6.9 years ago Ed Siefker ▴ 230
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2
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4.8k
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Thermo Xcalibur RAW data to MGF
mass spectrometry massspectrometry
updated 6.9 years ago by 1.6k • written 6.9 years ago by ▴ 10
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R function to deconvolve ESI MS spectra of multiple charge large biopolymers
mass spectrometry R mzR
7.0 years ago andreas.breidbach • 0
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1.3k
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MAIT or Specmine
metabolomics mait specmine mass spectrometry
7.5 years ago bhgyu ▴ 30
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1.5k
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Job: Post-doctoral mass spectrometry and proteomics bioinformatician (updated)
bioinformatics proteomics mass spectrometry job Job
7.9 years ago • updated 7.8 years ago Laurent Gatto 1.6k
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News: May Institute Computation and statistics for mass spectrometry and proteomics
proteomics mass spectrometry biostatistics News
8.2 years ago Laurent Gatto 1.6k
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1.7k
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News: Announcing short course in computational proteomics, May 2-6, 2016, Boston MA
proteomics tutorial mass spectrometry computational biology News
9.2 years ago Olga Vitek ▴ 40
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Shotgun lipidomics analysis
shotgun lipidomics lipidomics mass spectrometry
9.3 years ago Titan • 0
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Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq by ATpoint ★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Comment: GSEA preranked analysis downstream of DEseq2 by ATpoint ★ 4.8k
All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…
Comment: Check removeBatchEffect effectiveness by ATpoint ★ 4.8k
> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…
Answer: Check removeBatchEffect effectiveness by Gordon Smyth 52k
Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…
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Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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